hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08647/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0289  ( 1249 res)   mbg08647

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MACPF    membrane-attack complex / perforin             203.5    1.9e-56   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MACPF      1/1     758   946 ..     1   232 []   203.5  1.9e-56

Alignments of top-scoring domains:
MACPF: domain 1 of 1, from 758 to 946: score 203.5, E = 1.9e-56
                   *->qflvardtVrvrlytvkldesdlplaleFlkalrdLpdqynsanspd
                      ++++++++Vr+++y++kl+  +  +++ F +al++L   +++a    
   mKIAA0289   758    YPVLQHWKVRSVMYHIKLN--QAAISQAFSNALHSLDGATSRA---- 798  

                   qayarfiddYGTHYitSatlGGeyslllvldkeslerkgwltsediskcl
                    ++++++d++G+HYi++a +G+e+s+ +++++++++r++wl++edisk++
   mKIAA0289   799 -DFVALLDQFGNHYIQEAVYGFEESCSIWYPNKQVQRRLWLEYEDISKGN 847  

                   ngeakvelassnlvagsvsaemkhctqssssskslstresqtvrlshtqv
                   ++++++e       +++ +++   ++++ ++++sls++        ++++
   mKIAA0289   848 SPSDESE-------ERERDPK---VLTFPEYIASLSDSG-------TKRM 880  

                   lGGaseaievledlergrkgclqsnsldfseWaesvpneaPvlidvksla
                   + G    +++++ +++gr  c++s++l++++++  +p+e Pvl++v++++
   mKIAA0289   881 AAG----VRMEC-QSKGR--CPSSCPLCHVTSSPETPAE-PVLLEVTRAS 922  

                   PiyeLlpespfpvlvaleaspkreaLrqAlesYlk<-*
                   PiyeL++++           ++++ L++A++s+l+   
   mKIAA0289   923 PIYELVTNN-----------QTQRLLQEATMSSLW    946  

//