hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03130/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0287  ( 1618 res)   mbg03130

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    222.5    3.6e-62  12

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/12    373   395 ..     1    23 []    24.3    0.017
ZnF_C2H2   2/12    426   448 ..     1    23 []    27.8   0.0015
ZnF_C2H2   3/12    484   506 ..     1    23 []    25.7   0.0064
ZnF_C2H2   4/12    568   590 ..     1    23 []    28.0   0.0013
ZnF_C2H2   5/12    898   920 ..     1    23 []    28.9  0.00069
ZnF_C2H2   6/12   1139  1161 ..     1    23 []    22.9    0.046
ZnF_C2H2   7/12   1195  1217 ..     1    23 []    27.2   0.0023
ZnF_C2H2   8/12   1256  1278 ..     1    23 []    26.8    0.003
ZnF_C2H2   9/12   1313  1336 ..     1    23 []    19.7     0.42
ZnF_C2H2  10/12   1364  1386 ..     1    23 []     1.1  2.4e+02
ZnF_C2H2  11/12   1535  1557 ..     1    23 []    22.7     0.05
ZnF_C2H2  12/12   1594  1616 ..     1    23 []    26.8   0.0031

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 12, from 373 to 395: score 24.3, E = 0.017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg++fs  +++++H+ +H   
   mKIAA0287   373    YVCDE-CGRQFSVIsEFVEHQIMH    395  

ZnF_C2H2: domain 2 of 12, from 426 to 448: score 27.8, E = 0.0015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cg++fs+  aL +H ++H   
   mKIAA0287   426    FECKE-CGETFSRSaALAEHRQIH    448  

ZnF_C2H2: domain 3 of 12, from 484 to 506: score 25.7, E = 0.0064
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+++f + +aL++H+++H   
   mKIAA0287   484    YECKV-CKETFLHSsALIEHQKIH    506  

ZnF_C2H2: domain 4 of 12, from 568 to 590: score 28.0, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+sf + ++L++H+++H   
   mKIAA0287   568    YECKV-CGESFLHLsSLREHQKIH    590  

ZnF_C2H2: domain 5 of 12, from 898 to 920: score 28.9, E = 0.00069
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cg+ f ++++L++H+++H   
   mKIAA0287   898    FECQE-CGEAFARRsELIEHQKIH    920  

ZnF_C2H2: domain 6 of 12, from 1139 to 1161: score 22.9, E = 0.046
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cg  f++ ++L+ H+ +H   
   mKIAA0287  1139    YECQD-CGLGFTDLnDLTSHQDTH    1161 

ZnF_C2H2: domain 7 of 12, from 1195 to 1217: score 27.2, E = 0.0023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+Cp+ Cg+sf + + L +H+rvH   
   mKIAA0287  1195    YECPK-CGESFIHSsLLFEHQRVH    1217 

ZnF_C2H2: domain 8 of 12, from 1256 to 1278: score 26.8, E = 0.003
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C + Cg+ f + +aL++Hmr+H   
   mKIAA0287  1256    IRCRQ-CGQGFIHSsALNEHMRQH    1278 

ZnF_C2H2: domain 9 of 12, from 1313 to 1336: score 19.7, E = 0.42
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C+i Cg++f ++++L  H  +vH   
   mKIAA0287  1313    FECTI-CGECFFTAkQLGDHHTkVH    1336 

ZnF_C2H2: domain 10 of 12, from 1364 to 1386: score 1.1, E = 2.4e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cg+sf + +   + m  H   
   mKIAA0287  1364    YECKD-CGQSFLDDtVIAERMVFH    1386 

	[output cut off at A = 10 top alignments]
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