hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg03130/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0287 ( 1618 res) mbg03130 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 259.5 4.5e-74 12 DUF1610 Domain of unknown function (DUF1610) 10.1 0.94 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF1610 1/3 362 380 .. 1 24 [] 4.0 9.1 zf-C2H2 1/12 373 395 .. 1 24 [] 26.0 0.00091 zf-C2H2 2/12 426 448 .. 1 24 [] 32.3 1.1e-05 zf-C2H2 3/12 484 506 .. 1 24 [] 29.0 0.00011 zf-C2H2 4/12 568 590 .. 1 24 [] 31.5 2e-05 DUF1610 2/3 886 905 .. 1 24 [] 5.2 5.8 zf-C2H2 5/12 898 920 .. 1 24 [] 34.6 2.2e-06 zf-C2H2 6/12 1139 1161 .. 1 24 [] 29.7 6.9e-05 DUF1610 3/3 1186 1202 .. 1 24 [] 7.4 2.6 zf-C2H2 7/12 1195 1217 .. 1 24 [] 34.7 2.1e-06 zf-C2H2 8/12 1256 1278 .. 1 24 [] 26.9 0.00049 zf-C2H2 9/12 1313 1336 .. 1 24 [] 19.6 0.072 zf-C2H2 10/12 1364 1386 .. 1 24 [] 1.9 64 zf-C2H2 11/12 1535 1557 .. 1 24 [] 22.8 0.0082 zf-C2H2 12/12 1594 1616 .. 1 24 [] 27.9 0.00024 Alignments of top-scoring domains: DUF1610: domain 1 of 3, from 362 to 380: score 4.0, E = 9.1 *->CtsCGaelaprelgvkypCPnCGf<-* ++ ++ + +++y+C++CG mKIAA0287 362 ESQS----IDFG-ANPYVCDECGR 380 zf-C2H2: domain 1 of 12, from 373 to 395: score 26.0, E = 0.00091 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+ Fs s++ H+ +H mKIAA0287 373 YVCD-ECGRQFSVISEFVEHQIMH 395 zf-C2H2: domain 2 of 12, from 426 to 448: score 32.3, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++Fsr++ L H+++H mKIAA0287 426 FECK-ECGETFSRSAALAEHRQIH 448 zf-C2H2: domain 3 of 12, from 484 to 506: score 29.0, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+++F ++s L H+++H mKIAA0287 484 YECK-VCKETFLHSSALIEHQKIH 506 zf-C2H2: domain 4 of 12, from 568 to 590: score 31.5, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+sF + s+L+ H+++H mKIAA0287 568 YECK-VCGESFLHLSSLREHQKIH 590 DUF1610: domain 2 of 3, from 886 to 905: score 5.2, E = 5.8 *->CtsCGaelaprelgvkypCPnCGf<-* G la+ +++ + C +CG+ mKIAA0287 886 ----GELLAGHRRAKFFECQECGE 905 zf-C2H2: domain 5 of 12, from 898 to 920: score 34.6, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++F r+s+L H+++H mKIAA0287 898 FECQ-ECGEAFARRSELIEHQKIH 920 zf-C2H2: domain 6 of 12, from 1139 to 1161: score 29.7, E = 6.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCg F++ +L++H+ tH mKIAA0287 1139 YECQ-DCGLGFTDLNDLTSHQDTH 1161 DUF1610: domain 3 of 3, from 1186 to 1202: score 7.4, E = 2.6 *->CtsCGaelaprelgvkypCPnCGf<-* ++C + y CP+CG+ mKIAA0287 1186 EKKC------SG-EKLYECPKCGE 1202 zf-C2H2: domain 7 of 12, from 1195 to 1217: score 34.7, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cg+sF ++s L H+r+H mKIAA0287 1195 YECP-KCGESFIHSSLLFEHQRVH 1217 zf-C2H2: domain 8 of 12, from 1256 to 1278: score 26.9, E = 0.00049 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C +Cg+ F ++s L+ H+r H mKIAA0287 1256 IRCR-QCGQGFIHSSALNEHMRQH 1278 zf-C2H2: domain 9 of 12, from 1313 to 1336: score 19.6, E = 0.072 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ +Cg++F + ++L H + H mKIAA0287 1313 FECT-ICGECFFTAKQLGDHHTKvH 1336 zf-C2H2: domain 10 of 12, from 1364 to 1386: score 1.9, E = 64 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCg+sF + + H mKIAA0287 1364 YECK-DCGQSFLDDTVIAERMVFH 1386 zf-C2H2: domain 11 of 12, from 1535 to 1557: score 22.8, E = 0.0082 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C ++F ++s + Hl++H mKIAA0287 1535 YNCH-ECAETFASSSAFGEHLKSH 1557 zf-C2H2: domain 12 of 12, from 1594 to 1616: score 27.9, E = 0.00024 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg+ F+++ +L rH+++H mKIAA0287 1594 FKCD-VCGQLFNDRLSLARHQNSH 1616 //