hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg02094/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0284 ( 1629 res) mbg02094 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- FHA Forkhead associated domain 48.0 1.2e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FHA 1/1 77 128 .. 1 49 [] 48.0 1.2e-09 Alignments of top-scoring domains: FHA: domain 1 of 1, from 77 to 128: score 48.0, E = 1.2e-09 *->tvtiGRsscdivlpspsiSRrHaeiv.dgd....yliDlgenSsNGT + +GR++c + l+s+s+ ++Ha+i d+d+++++++Dlg S NGT mKIAA0284 77 LIFVGRDECELMLQSRSVDKQHAVINyDQDrdehWVKDLG--SLNGT 121 fVNgrrv<-* fVN++r+ mKIAA0284 122 FVNDVRI 128 //