hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mic/mic41033/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0283 ( 1054 res) mic41033 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PTPc Protein tyrosine phosphatase, catalytic do 782.4 1.1e-230 2 PTPc_motif Protein tyrosine phosphatase, catalytic do 270.0 1.8e-76 2 FN3 Fibronectin type 3 domain 30.2 0.00028 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FN3 1/1 89 179 .. 1 69 [] 30.2 0.00028 PTPc_motif 1/2 654 755 .. 1 92 [] 158.7 5.9e-43 PTPc 1/2 481 758 .. 1 308 [] 444.7 4.8e-129 PTPc_motif 2/2 944 1049 .. 1 92 [] 111.7 8.2e-29 PTPc 2/2 787 1052 .. 1 308 [] 341.5 5.6e-98 Alignments of top-scoring domains: FN3: domain 1 of 1, from 89 to 179: score 30.2, E = 0.00028 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY Pg+++ ++ + + ++W+pP++ ++ ++++Y mKIAA0283 89 PGAVPL---ESIQGGPFEE-----KIYIQWKPPnetngvitlyEINY 127 r..........................ytltgLkPgaepwteYefrVrAv + +++ +++ + +++++++ + ++++ + + gL Pg t+Y+f+++A mKIAA0283 128 KavgsldpsadlssqrgkvfklrnethHLFVGLYPG----TTYSFTIKAS 173 ngndaGeg<-* ++ +G g mKIAA0283 174 TA--KGFG 179 PTPc_motif: domain 1 of 2, from 654 to 755: score 158.7, E = 5.9e-43 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.......PivV +++ +h+t+WpDh gvP ++l f+r+v+ ++++ +PivV mKIAA0283 654 ELRLFHFTSWPDH-----GVPCyaTGLLGFVRQVKFlnppeagPIVV 695 HCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqteeQ HCSAG+GRTG+f+aid++l++ ++++ vdif++v+elR qR ++vqteeQ mKIAA0283 696 HCSAGAGRTGCFIAIDTMLDMaenegvVDIFNCVRELRAQRVNLVQTEEQ 745 YlFlyralle<-* Y+F+++a+le mKIAA0283 746 YVFVHDAILE 755 PTPc: domain 1 of 2, from 481 to 758: score 444.7, E = 4.8e-129 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi g++eE+e l++ ++ s+++a+ +eNr +KNRY +i mKIAA0283 481 GFKEEYEALPEGQTA----------SWDTAKEDENR--NKNRYG-NI 514 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT + yDh+RV+L +dg+ ++sDYINAnyidgy++p+ yIaTQGP+++T mKIAA0283 515 ISYDHSRVRLLVLDGD----PHSDYINANYIDGYHRPRHYIATQGPMQET 560 veDFWrMVweqkvpvIVMLtnlvEkkte.............rr.keggre v DFWrM+w++++++IVM tnlvE ++++ +++ ++ + r + g + mKIAA0283 561 VKDFWRMIWQENSASIVMVTNLVEV--GrhpaehtvgtatlGRaASPGMV 608 KCaqYWPeesltyGditVtlvseeklpddytiRtlevtntgtekkdlkak KC +YWP+++++yGdi+Vtl+++e l+ +y+iRt++v+++g mKIAA0283 609 KCVRYWPDDTEVYGDIKVTLIETEPLA-EYVIRTFTVQKKGY-------- 649 setrtVthyhytnWPDhgvPespkslldfvrlvrksqssspnssenivss e r+++ +h+t+WPDhgvP +++ll fvr+v+ ++ + mKIAA0283 650 HEIRELRLFHFTSWPDHGVPCYATGLLGFVRQVKFLNPPE---------- 689 nskyagtspsgPivVHCSAGvGRTGTFiaidillqqlea...vdifdiVk +gPivVHCSAG+GRTG+Fiaid++l++ e+++ vdif++V+ mKIAA0283 690 ---------AGPIVVHCSAGAGRTGCFIAIDTMLDMAENegvVDIFNCVR 730 elRsqRpgmVQTeeQYiFlyraileylk<-* elR qR ++VQTeeQY+F+++aile ++ mKIAA0283 731 ELRAQRVNLVQTEEQYVFVHDAILEACL 758 PTPc_motif: domain 2 of 2, from 944 to 1049: score 111.7, E = 8.2e-29 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk..........P +v h++y gWp + +P ++ s+l+ +r+++k +++ +++++ mKIAA0283 944 IVQHLQYIGWPAY----RDTPPskRSLLKVVRRLEKwqeqydgregR 986 ivVHCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqt +vVHC +G GR+Gtf+ai++++++ ++++ +d+f +vk lR+ + +mv+t mKIAA0283 987 TVVHCLNGGGRSGTFCAICSVCEMiqqqniIDVFHIVKTLRNNKSNMVET 1036 eeQYlFlyralle<-* +eQY+F+y++ le mKIAA0283 1037 LEQYKFVYEVALE 1049 PTPc: domain 2 of 2, from 787 to 1052: score 341.5, E = 5.6e-98 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi ++++Ef++l +tp +++ +c+++ lp N+ +KNR+ d+ mKIAA0283 787 QIKDEFQTLNIVTPRVRPE------DCSIGLLPRNH--DKNRSM-DV 824 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT lp D++ L + dg e+s+YINA +d++k+p a+ +TQ+PLp+T mKIAA0283 825 LPLDRCLPFLISVDG-----ESSNYINAALMDSHKQPAAFVVTQHPLPNT 869 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty v+DFWr V++++++++VML++ + C qYWPe++s +y mKIAA0283 870 VADFWRLVFDYNCSSVVMLNEMDTA----------QLCMQYWPEKtSGCY 909 GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn G i+V++vs ++ + d++ R ++++n + + + r+V h++y + mKIAA0283 910 GPIQVEFVSADIDE-DIIHRIFRICNMARPQ------DGYRIVQHLQYIG 952 WPDh.gvPespkslldfvrlvrksqssspnssenivssnskyagtspsgP WP +++P+s +sll+ vr+ +k+q+++ + ++g mKIAA0283 953 WPAYrDTPPSKRSLLKVVRRLEKWQEQY----------------DGREGR 986 ivVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQT +vVHC +G GR+GTF+ai+ +++++++++ +d+f iVk+lR+ +mV+T mKIAA0283 987 TVVHCLNGGGRSGTFCAICSVCEMIQQqniIDVFHIVKTLRNNKSNMVET 1036 eeQYiFlyraileylk<-* +eQY+F+y+++leyl+ mKIAA0283 1037 LEQYKFVYEVALEYLS 1052 //