hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic41033/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0283  ( 1054 res)   mic41033

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Y_phosphatase Protein-tyrosine phosphatase              769.5   1.4e-227   2
fn3           Fibronectin type III domain                41.7    1.7e-08   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
fn3             1/1      89   182 ..     1    84 []    41.7  1.7e-08
Y_phosphatase   1/2     505   755 ..     1   275 []   451.7 6.1e-132
Y_phosphatase   2/2     815  1049 ..     1   275 []   324.5  1.2e-93

Alignments of top-scoring domains:
fn3: domain 1 of 1, from 89 to 182: score 41.7, E = 1.7e-08
                   *->PsaPtnltvtdv.tstsltlsWsppt.gngpitgYevtyRqpkngge
                      P+a+   ++ + + +  + ++W+pp + ng+it Ye+ y + +++ +
   mKIAA0283    89    PGAVPLESIQGGpFEEKIYIQWKPPNeTNGVITLYEINY-KAVGSLD 134  

                   .........wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<
                   ++ + ++++ + + + + t ++ + gL Pgt+Y+++++A +++G Gp+  
   mKIAA0283   135 psadlssqrGKVFKLRNET-HHLFVGLYPGTTYSFTIKASTAKGfGPPV  182  

                   -*
                     
   mKIAA0283     -    -    

Y_phosphatase: domain 1 of 2, from 505 to 755: score 451.7, E = 6.1e-132
                   *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAnyidgpivrllvv
                      N++KNRy +i+ yDh+RV+L  ++gd++sDYINAnyidg        
   mKIAA0283   505    NRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANYIDG-------- 543  

                   ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrs.....
                   y++p++yIaTQgP+++T++DFWrM+w++++++IVM+t+lvE gr + +++
   mKIAA0283   544 YHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVTNLVEVGRHpaeht 593  

                   .............seKtCaqYWPeeskeggsltyGditVtlvseekeady
                    ++ + ++  +++++K C +YWP+     ++++yGdi+Vtl+++e +a+y
   mKIAA0283   594 vgtatlgraaspgMVK-CVRYWPD-----DTEVYGDIKVTLIETEPLAEY 637  

                   tvRtleltn.gdgskilakqekkgetrtVthfhytgWPDhgvPesgpksl
                   ++Rt++++++g            +e r+++ fh+t+WPDhgvP   +++l
   mKIAA0283   638 VIRTFTVQKkGY-----------HEIRELRLFHFTSWPDHGVPCY-ATGL 675  

                   ldllrkvrksqpsnvelgerspdsgprSystaPivVHCSAGvGRTGtfia
                   l ++r+v+  +p         p +g       PivVHCSAG+GRTG+fia
   mKIAA0283   676 LGFVRQVKFLNP---------PEAG-------PIVVHCSAGAGRTGCFIA 709  

                   idillqqleaegevidvfdiVkelRsqRpgmVQteeQYiFlydaile<-*
                   id++l++ e+eg+v d+f++V+elR+qR ++VQteeQY+F++daile   
   mKIAA0283   710 IDTMLDMAENEGVV-DIFNCVRELRAQRVNLVQTEEQYVFVHDAILE    755  

Y_phosphatase: domain 2 of 2, from 815 to 1049: score 324.5, E = 1.2e-93
                   *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAnyidgpivrllvv
                      N++KNR+ d+lp D++   L ++ ++e+s+YINA  +d+        
   mKIAA0283   815    NHDKNRSMDVLPLDRCLPFLISV-DGESSNYINAALMDS-------- 852  

                   ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC
                   +k+p a+ +TQ+PlpnT++DFWr v++++++++VML+e +  +      C
   mKIAA0283   853 HKQPAAFVVTQHPLPNTVADFWRLVFDYNCSSVVMLNEMDTAQL-----C 897  

                   aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskila
                    qYWPe     +s  yG+i+V+ vs + ++d++ R ++++n  +++    
   mKIAA0283   898 MQYWPE----KTSGCYGPIQVEFVSADIDEDIIHRIFRICNmARPQ---- 939  

                   kqekkgetrtVthfhytgWPDh.gvPesgpkslldllrkvrksqpsnvel
                        +  r+V+h++y+gWP ++++P+s+ +sll+++r+++k+q++    
   mKIAA0283   940 -----DGYRIVQHLQYIGWPAYrDTPPSK-RSLLKVVRRLEKWQEQ---- 979  

                   gerspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidv
                     ++++ g        +vVHC +G GR+Gtf+ai  +++++++ + + dv
   mKIAA0283   980 --YDGREG-------RTVVHCLNGGGRSGTFCAICSVCEMIQQQNII-DV 1019 

                   fdiVkelRsqRpgmVQteeQYiFlydaile<-*
                   f+iVk+lR+   +mV+t+eQY+F+y++ le   
   mKIAA0283  1020 FHIVKTLRNNKSNMVETLEQYKFVYEVALE    1049 

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