hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04731/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0282  ( 831 res)   mbh04731

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BBC      B-Box C-terminal domain                        142.9    3.4e-38   1
BBOX     B-Box-type zinc finger, protein interaction     82.2    6.5e-20   2
FN3      Fibronectin type 3 domain                       38.4    9.7e-07   1
SPRY     Domain in SPla and the RYanodine Receptor.      32.2    7.2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BBOX       1/2     206   255 ..     1    51 []    46.0    5e-09
BBOX       2/2     267   309 ..     1    51 []    44.4  1.5e-08
BBC        1/1     316   442 ..     1   132 []   142.9  3.4e-38
FN3        1/1     482   565 ..     1    69 []    38.4  9.7e-07
SPRY       1/1     715   818 ..     1   145 []    32.2  7.2e-05

Alignments of top-scoring domains:
BBOX: domain 1 of 2, from 206 to 255: score 46.0, E = 5e-09
                   *->eraplCeeHgd.eepaeffCveedgallCrdCdeageHqanklfrgH
                      ++a++C+ +++  ++a+++C e++++++C++C++  +H+++++ ++H
   mKIAA0282   206    AAALKCQLCEKaPKEATVMC-EQCDVFYCDPCRLR-CHPPRGPLAKH 250  

                   rvvll<-*
                   r v+    
   mKIAA0282   251 RLVPP    255  

BBOX: domain 2 of 2, from 267 to 309: score 44.4, E = 1.5e-08
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      +++  C+ H+  e   ++C +++ ++ C++C e+g+H      ++H+
   mKIAA0282   267    RKVSTCTDHE-LENHSMYC-VQCKMPVCYQCLEEGKH------SSHE 305  

                   vvll<-*
                   v+ l   
   mKIAA0282   306 VKAL    309  

BBC: domain 1 of 1, from 316 to 442: score 142.9, E = 3.4e-38
                   *->qreaLeelleklrkkaeelekalkqldsiiqevegGqvdenaeevea
                      ++ +L++ l+ l+++a+e+++ l ql+ ++q+++     en +e+ea
   mKIAA0282   316    HKSQLSQALNGLSDRAKEAKEFLVQLRTMVQQIQ-----ENSVEFEA 357  

                   eikaafdeLrnaLnerkkqLledLeevkenklkkLeqQlesltqkqekle
                   ++ a++d L++aLn+rk+qLl+++++++e+klk+ ++Q+ ++t+k+++++
   mKIAA0282   358 CLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTT 407  

                   hainfaeeaLnsgdptelLlskkliierlqellkq<-*
                   ++++++ e ++++dp+ +L++++++i+r++  ++q   
   mKIAA0282   408 GLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQ    442  

FN3: domain 1 of 1, from 482 to 565: score 38.4, E = 9.7e-07
                   *->PgpPsnptelrvtdvtststsdltsvtlsWe.pP.....ivgYr...
                      P p +    l++++  ++++    s+tlsW++pP +     gY+ + 
   mKIAA0282   482    PVPATPI--LQLEECCTHNN----SATLSWKqPPlstvaADGYIlel 522  

                   ..................ytltgLkPgaepwteYefrVrAvngndaGeg<
                   +++++++ +++ +++++ +t++gL+ +    ++Y+ rV+A+n+   G + 
   mKIAA0282   523 ddgsggqfrevyvgketmCTVDGLHFN----STYNARVKAFNK--TGVS  565  

                   -*
                     
   mKIAA0282     -    -    

SPRY: domain 1 of 1, from 715 to 818: score 32.2, E = 7.2e-05
                   *->sGkhYfEVevdtggdkghwrvGvatksvhlypfkvrrkrkggvsllG
                      +G+hY+E ++d+ +  +   +Gva+ +v             ++++lG
   mKIAA0282   715    KGVHYWELTIDRYDNHPDPAFGVARIDV------------MKDMMLG 749  

                   edkgSwgyrgdggkkyhasefgeeyglpfqepgDviGcflDleaggStis
                   +d++ w++   g                 ++ g  iG++lDl     t++
   mKIAA0282   750 KDDKAWAITEGG----------------ITK-GATIGVLLDLNRK--TLT 780  

                   FykNGkyLgdshilaffdvtfsgpLyPavslgstdgGgesvrlnfGp.p<
                   F+ N+++ g    +af++v++   ++Pavsl+ ++     v++++ ++  
   mKIAA0282   781 FFVNNEQQG---PIAFENVEG--LFFPAVSLN-RN-----VQVTLHTgL  818  

                   -*
                     
   mKIAA0282     -    -    

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