hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid33058/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0276  ( 232 res)   mid33058

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF298   Domain of unknown function (DUF298)            201.8      1e-56   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF298     1/1     113   227 ..     1   138 []   201.8    1e-56

Alignments of top-scoring domains:
DUF298: domain 1 of 1, from 113 to 227: score 201.8, E = 1e-56
                   *->iqkLkerlpfleseLesFLFLsLeGeDpekFkdiYrfAFnfakdpid
                      ++kL++ l++l+s L+          D  +Fk iYr+AF+fa+++ d
   mKIAA0276   113    TEKLRTTLDYLRSLLN----------DTTNFKLIYRYAFDFAREK-D 148  

                   qkslDletaialwkllfgseYPvRcrwpllehwidFLedhhnranRvIsk
                   q+slD+ ta++++ ll+g+       wpl++++ +FLe+++++    I+k
   mKIAA0276   149 QRSLDINTAKCMLGLLLGK------IWPLFPVFHQFLEQSKYKV---INK 189  

                   DtWnllLeFsrRYEtidpDlsnYDeegAWPvLiDeFVEwlq<-*
                   D+W+++LeFsr   ti+ DlsnYDe+gAWPvL+DeFVEw +   
   mKIAA0276   190 DQWCNVLEFSR---TISLDLSNYDEDGAWPVLLDEFVEWYK    227  

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