hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09539/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0275  ( 380 res)   mbg09539

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TY       Thyroglobulin type I repeats.                   77.8    1.3e-18   1
KAZAL    Kazal type serine protease inhibitors           56.2    4.1e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KAZAL      1/1      92   137 ..     1    58 []    56.2  4.1e-12
TY         1/1     290   336 ..     1    58 []    77.8  1.3e-18

Alignments of top-scoring domains:
KAZAL: domain 1 of 1, from 92 to 137: score 56.2, E = 4.1e-12
                   *->dCseyrsptsggllaCpre.ydPVCGsDGvTYsNeCeLcaaaCeaeq
                      +C+            C++ +++ VCGsDG+TYs+ C L+++aC   +
   mKIAA0275    92    VCK-----------PCHMAqLASVCGSDGHTYSSVCKLEQQACL--S 125  

                   gksievkhdGpC<-*
                    k++ v+++GpC   
   mKIAA0275   126 SKQLAVRCEGPC    137  

TY: domain 1 of 1, from 290 to 336: score 77.8, E = 1.3e-18
                   *->iPqCdedGnYepvQCdgssggkRGqCWCVDpasGreipGtRtepGia
                      iP CdedG+Y+++QCd+s+    G CWCVD   G e+ GtR      
   mKIAA0275   290    IPSCDEDGYYRKMQCDQSR----GDCWCVD-QLGLELTGTRM----- 326  

                   pggdpdCpspc<-*
                    +g+pdC++++   
   mKIAA0275   327 -HGTPDCDDIV    336  

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