hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09539/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0275  ( 380 res)   mbg09539

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Thyroglobulin_1 Thyroglobulin type-1 repeat              71.9    1.3e-17   1
Kazal_2         Kazal-type serine protease inhibitor     56.4    6.2e-13   1
Kazal_1         Kazal-type serine protease inhibitor     32.9    7.4e-06   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Kazal_1           1/1      93   137 ..     1    61 []    32.9  7.4e-06
Kazal_2           1/1      92   137 ..     1    61 []    56.4  6.2e-13
Thyroglobulin_1   1/1     269   332 ..     1    81 []    71.9  1.3e-17

Alignments of top-scoring domains:
Kazal_1: domain 1 of 1, from 93 to 137: score 32.9, E = 7.4e-06
                   *->CsrypnptskDGklvaCp.reydPVCGsDGvTYsNECeLkkaaCaen
                      C+              C  +++  VCGsDG+TYs+ C L++ aC   
   mKIAA0275    93    CKP-------------CHmAQLASVCGSDGHTYSSVCKLEQQAC--- 123  

                   veqgtniekkhdGpC<-*
                     + +++ +   GpC   
   mKIAA0275   124 -LSSKQLAVRCEGPC    137  

Kazal_2: domain 1 of 1, from 92 to 137: score 56.4, E = 6.2e-13
                   *->eCseyrsqvrNGlaCpreegydPVCGsDGckTYsNeCalgcanCkag
                      +C+           C  ++ +  VCGsDG +TYs+ C+l++++C++ 
   mKIAA0275    92    VCK----------PCHMAQ-LASVCGSDG-HTYSSVCKLEQQACLSS 126  

                   flegelrlkydGeC<-*
                      ++l ++++G+C   
   mKIAA0275   127 ---KQLAVRCEGPC    137  

Thyroglobulin_1: domain 1 of 1, from 269 to 332: score 71.9, E = 1.3e-17
                   *->CqrelervleslaaeqlkteehlesprglYvPnCdenGfYkpvQCdp
                      C+ eler++ + a         + +++g+++P+Cde+G Y++ QCd 
   mKIAA0275   269    CLAELERTQIQEA---------AKKKPGVFIPSCDEDGYYRKMQCDQ 306  

                   SlggqrGeCWCVDaetGkelpGtrdvgGetPprC<-*
                       +rG CWCVD   G el+Gt +  G   p+C   
   mKIAA0275   307 ----SRGDCWCVDQL-GLELTGT-RMHGT--PDC    332  

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