hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mnh/mnh11265/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0274  ( 652 res)   mnh11265

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Syja_N   SacI homology domain                           111.0    2.2e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Syja_N     1/1       1   175 [.     1   366 []   111.0  2.2e-29

Alignments of top-scoring domains:
Syja_N: domain 1 of 1, from 1 to 175: score 111.0, E = 2.2e-29
                   *->iyGllGlIkLkggdvmLyYLivITgkskVGqigpghaIYkitdvdfi
                                  g                   +              
   mKIAA0274     1    ------------G-------------------Q-------------- 2    

                   slnndsvdetdiekkDEarylkihPdgisTdtqeklpkhPcslLkkvLst
                                       +                             
   mKIAA0274     3 -------------------SKL---------------------------- 5    

                   gtFYFSytyDltntLQrnskvlraplenlessvdradesifdiITdyner
                                                                     
   mKIAA0274     - -------------------------------------------------- -    

                   FvWNsfLleelinfRshLdneekqqlnverFllpvIhGfikqaslyvngk
                             li                                   +g+
   mKIAA0274     6 ----------LI-----------------------------------YGR 10   

                   tisltLISRRStkRAGTRFlkRGvnddGhVANFVETEQIVydsdskseka
                   ++++tLI+RRS+++AGTRFlkRG+n++G+VAN+VETEQI++d +++s++a
   mKIAA0274    11 PVYVTLIARRSSRFAGTRFLKRGANCEGDVANEVETEQILCDASVMSFTA 60   

                   .rysSFVQvRGSIPLFWeQdvegsnLsyKPlivlrsveatapafdrHFdd
                   ++ysS+VQvRGS+PLFW+Qd  +s++++KP+i+l++++++a+++++HFd+
   mKIAA0274    61 gSYSSYVQVRGSVPLFWSQD--ISTMMPKPPITLDQADPFAHVAALHFDQ 108  

                   lkqrYGnpivIvNLiktkkekEkplsklyeeflkaseylnsflpeeekir
                   + qr+G+pi+I+NL+k+ +ek+k+++ l ee++ a++yln+flp e  i 
   mKIAA0274   109 MLQRFGSPIIILNLVKE-REKRKHERILSEELVAAVTYLNQFLPPEHTIV 157  

                   ytsFDFHkeckqmnmswdrl<-*
                   y+ +D+ k +k++    ++l   
   mKIAA0274   158 YIPWDMAKYTKSK--LCNVL    175  

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