hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03915/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0272  ( 740 res)   mbh03915

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase,    396.6   2.5e-115   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Peptidase_C12   1/1      16   228 ..     1   225 []   396.6 2.5e-115

Alignments of top-scoring domains:
Peptidase_C12: domain 1 of 1, from 16 to 228: score 396.6, E = 2.5e-115
                   *->rWlpLESnPgVfTelieklGvkgdEvqveDvysLddElLemiprPvh
                      +Wl+LES+Pg+fT l+e++Gvkg  vqve++y+L+    ++++ Pv+
   mKIAA0272    16    GWLELESDPGLFTLLVEDFGVKG--VQVEEIYDLQ----SKCQGPVY 56   

                   AlIFLFpwtekve..ekrkeepkgikvqdsdvsdsvFFaKQtIpNACGTq
                   ++IFLF+w+e++++++k+++  +++ v+d+d  +++FFa+Q IpN+C+T+
   mKIAA0272    57 GFIFLFKWIEERRsrRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATH 106  

                   ALLHaLlNnedeidvdlGstLkrFleftkdlsPeeRgkaLeNseeiraaH
                   ALL++LlN+    +vdlG+tL+r+++ftk++sPe +g+a++N++e+++aH
   mKIAA0272   107 ALLSVLLNCS---NVDLGPTLSRMKDFTKGFSPESKGYAIGNAPELAKAH 153  

                   NSfaraqegqteekeaaGlS.vrdedvnyHFIayVpinGtLYELDGrkeg
                   NS+ar+++++++ek+ +GlS vr +++++HF++yVpi+G+L+ELDG+k +
   mKIAA0272   154 NSHARPEPRHLPEKQ-NGLSaVR-TMEAFHFVSYVPITGRLFELDGLKVY 201  

                   PinhGetsetaTdtllkDavrpVikermery<-*
                   Pi+hG++ e   d++++D++r+Vi+er++ +   
   mKIAA0272   202 PIDHGPWGE---DEEWTDKARRVIMERIG-L    228  

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