hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mia/mia06063/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0271  ( 192 res)   mia06063

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BCL      BCL (B-Cell lymphoma); contains BH1, BH2 reg   166.6    2.5e-45   1
BH4      BH4 Bcl-2 homology region 4                     53.8    2.2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BH4        1/1       7    33 ..     1    27 []    53.8  2.2e-11
BCL        1/1      47   145 ..     1   120 []   166.6  2.5e-45

Alignments of top-scoring domains:
BH4: domain 1 of 1, from 7 to 33: score 53.8, E = 2.2e-11
                   *->srldsReLVvDfvsYKLsQnGyeweag<-*
                      s++d+R+LV+Dfv+YKL+Q+Gy+++ag   
   mKIAA0271     7    STPDTRALVADFVGYKLRQKGYVCGAG    33   

BCL: domain 1 of 1, from 47 to 145: score 166.6, E = 2.5e-45
                   *->LrrvgdelenkryerafssfsaqlhvsvatpetaielfteVatelfe
                      +r++gde+e  r++r+fs+++aqlhv   tp++a+++ft+V +elf+
   mKIAA0271    47    MRAAGDEFE-TRFRRTFSDLAAQLHV---TPGSAQQRFTQVSDELFQ 89   

                   dGqPCniNWGRvVallsFggaLalklvnsqikeledlvsrlasfrvesll
                    G     NWGR+Va+++Fg+aL++++vn   ke+e+lv++++++     +
   mKIAA0271    90 GG----PNWGRLVAFFVFGAALCAESVN---KEMEPLVGQVQDW-----M 127  

                   veflketlgeRfpaeWlrenGGW<-*
                   v++l+++l     a+W+++ GGW   
   mKIAA0271   128 VAYLETRL-----ADWIHSSGGW    145  

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