hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mia/mia06063/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0271  ( 192 res)   mia06063

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Bcl-2    Apoptosis regulator proteins, Bcl-2 family     192.5    6.7e-54   1
BH4      Bcl-2 homology region 4                         53.8    3.7e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BH4        1/1       7    33 ..     1    27 []    53.8  3.7e-12
Bcl-2      1/1      47   145 ..     1   107 []   192.5  6.7e-54

Alignments of top-scoring domains:
BH4: domain 1 of 1, from 7 to 33: score 53.8, E = 3.7e-12
                   *->srldsReLVvDfvsYKLsQnGyeweag<-*
                      s++d+R+LV+Dfv+YKL+Q+Gy+++ag   
   mKIAA0271     7    STPDTRALVADFVGYKLRQKGYVCGAG    33   

Bcl-2: domain 1 of 1, from 47 to 145: score 192.5, E = 6.7e-54
                   *->LrraGdelekrveraFssmsrqlhitpetArelFtqVaeelFeDGgi
                      +r+aGde+e r++r+Fs+++ qlh+tp+ A+++FtqV +elF++ g 
   mKIAA0271    47    MRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQG-GP 92   

                   PCPmNWGRiVaLfsFggaLaaklvekemeDVelvsriadwvveFlkenil
                       NWGR+Va+f+Fg+aL+a++v+keme  +lv++++dw+v++l+++ l
   mKIAA0271    93 ----NWGRLVAFFVFGAALCAESVNKEME--PLVGQVQDWMVAYLETR-L 135  

                   aeWiqenGGW<-*
                   a+Wi++ GGW   
   mKIAA0271   136 ADWIHSSGGW    145  

//