hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbj/mbj00725/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0270 ( 350 res) mbj00725 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Paralemmin Paralemmin 544.0 1e-159 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Paralemmin 1/1 37 350 .] 1 348 [] 544.0 1e-159 Alignments of top-scoring domains: Paralemmin: domain 1 of 1, from 37 to 350: score 544.0, E = 1e-159 *->ssiqlqsDefKttglevyvdRleseyevlennssayngTkenApvev +++q+q+De+K +gle+++ Rle+e+ vle ++sa++ ken ++++ mKIAA0270 37 MRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPS 83 eeLaraASpakeeskTEyhepvqanPfgtpvtpkRvsstplpgvngqeri + + + ASpakee+k E + q++P+gt +++ R s tp++ + g+ ++ mKIAA0270 84 PGRPQSASPAKEEQKSETLVNAQQTPLGT-PKENRTS-TPVRSPGGSTMM 131 kaamysveitVeKdsvtgeTkvLSsttllprnHlspgikVyedeskVvhA kaamysveitVeKd+vtgeT+vLSstt lpr +l++g kVyede+kVvhA mKIAA0270 132 KAAMYSVEITVEKDKVTGETRVLSSTTVLPRDPLPQGVKVYEDETKVVHA 181 veavhtaqkngaqPlssSeVDELlHkaDevtlSeagelSgaeeapGkses v++ + +ng+qPlssSeVDEL+HkaDevtlSeag+++g +e +G +e mKIAA0270 182 VDGIA---ENGIQPLSSSEVDELIHKADEVTLSEAGSTAGPAEPRGLAED 228 qasstpcrrEitgVraniveslpGPeGadpddeePVTMIFMGYQnvEDee ++tp+rrEitgV a+++e+++GP+G++p++e+PVTM+FMGYQnvEDe+ mKIAA0270 229 VTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFMGYQNVEDEA 278 EtKKvLTGldGtIhAELVVIeDEdaeeegepEkpsyaPpngsaqepqpaK EtKKvL Gl++tI+AELVVIe da+ + ep aP ngsa+e ++ mKIAA0270 279 ETKKVL-GLQDTIKAELVVIE--DAATPREP-----APLNGSAAELPA-- 318 PtPLpRkeaeagpkpnTnhksPhknsISLKEQEErldsdakksrckcctv +e++ g p T+ ++ +d+d+kk rc cc+v mKIAA0270 319 ----TKEENQTG--PTTTPSDT-------------QDLDMKKPRCRCCSV 349 m<-* m mKIAA0270 350 M 350 //