hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB Sequence file: /cdna4/rodent/full/goal/mbh/mbh01806/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0267 ( 700 res) mbh01806 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- b_cpa1 b_cpa1: sodium/hydrogen exchanger 3 183.2 4.3e-51 1 a_cpa1 a_cpa1: Na+/H+ antiporter -87.7 6.4e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- a_cpa1 1/1 125 649 .. 1 541 [] -87.7 6.4e-08 b_cpa1 1/1 63 686 .. 1 627 [] 183.2 4.3e-51 Alignments of top-scoring domains: a_cpa1: domain 1 of 1, from 125 to 649: score -87.7, E = 6.4e-08 *->VviveLvvav......savvvlvkryrvPlpvl.lilaGaL..lGLa V v+L v++++++ v v +k+y +++ + i + L+++ mKIAA0267 125 VNNVTLSCEVqsspttLLVNVSGKFYE--YTLKgEISSHELnnVQDN 169 gllleVeldrEvvLlLFLPpLLFeeamntdlrElrenlReIvllAlalVV +l V +d+Ev++ + LPp+ F ++ r + nl+ I A+++ mKIAA0267 170 EMLRKVTFDPEVFFNILLPPIIFYAGYSLKRRHFFRNLGSILAYAFLGTA 219 vTvvaVgFslrWvvLGipla..lA........lvLGAvlSpTDAvAvagl + ++g ++ v + ++lA++ ++ l +GA++S+TD+v v+++ mKIAA0267 220 ISCFVIGSIMYGCVTLMKVTgqLAgdfyftdcLLFGAIVSATDPVTVLAI 269 vkeirlPkkllivLeGESllNDGaALVvfavAvavalGka....vfdpaa + e + l +L GES+lND+ A+V+ va ++++++ fd+ a mKIAA0267 270 FHELQVDVELYALLFGESVLNDAVAIVLSSSIVAYQP-AGdnshTFDVTA 318 a.......vveFvvvavGGilaGLvVgyLvtRsLRFLlRakiDeplveia ++ + + F + G++ G vV Lvt l e mKIAA0267 319 MfksigifLGIFSGSFAMGAATG-VVTALVTK----FT-KLREFQLLETG 362 llllapFaaFlLAerlkvSGVvAvvaAGLvLtrvGrdfsisaasRlrald l +l + FlLAe ++ GVvAv+ G++ + s s r mKIAA0267 363 LFFLMSWSTFLLAEAWGFTGVVAVLFCGITQAHYTYN-NLSTESQHRTKQ 411 fWsvlvFlvNgivFvLvGvqlpgiiesalkeaev..apaaviLalavtav l Fl +F G+ l + v +a a L + a mKIAA0267 412 LFELLNFLAENFIFSYMGLTLFTFQNHVFNPTFVvgAFIAIFLGR---AA 458 viyavlayvrfGWltvlkkfvnRvLKKktrevGsWtfreklVvswAGlRG iy+ + ++ + +G + +AGlRG mKIAA0267 459 NIYPLSLLLNL------GRRSK---------IG---SNFQHMMMFAGLRG 490 aislAaaLSvPllllsgaaFPdRyllvFlvavViLfslLv..qgvsLpil a A+a + + F l+vF f++ v ++g+ mKIAA0267 491 AMAFALAIRDTATYARQMMFSTTLLIVF-------FTVWVfgGGTTAMLS 533 vkrkevaedserek.....EeriARaiaAraA.lvaLqkvverlaADvve +++v ds +e + ++ er R+ A++A l+ + + mKIAA0267 534 CLHIRVGVDSDQEHlgvpdNER--RTTKAESAwLFRMWYNFDHNY---LK 578 dvakeLlkeldervvenLRlrAdgeekveSdlaeknDLerrvrlavLdak ++ + + l + +S a +n L+ mKIAA0267 579 PLLTHSGPPLTTTLPA---CCGPIARCLTSPQAYEN-------QEQLKDD 618 rsavvdlratrlisdevlreLlreLDlkeaeLle<-* s ++ + + is + + +a mKIAA0267 619 DSDLI--LNDGDIS-LTYGDSTVNTESATASAPR 649 b_cpa1: domain 1 of 1, from 63 to 686: score 183.2, E = 4.3e-51 *->dyehvqkPyeivLwILLaSLaKigfHLt.hkvlrvvPESvLLIvyGl + h q+ + ILL +L + L +h++ r ++E+ L ++yGl mKIAA0267 63 EESHRQDSANLLIFILLLTLTILTIWLFkHRRARFLHETGLAMIYGL 109 lvG............................giikaldhHY......... lvG + + + +++ ++ + + + +++++++++ +++ Y+ + +++ + mKIAA0267 110 LVGlvlrygihvpsdvnnvtlscevqsspttLLVNVSGKFYeytlkgeis 159 ......Iidp.....ptLdsslFFlyLLPPIVLdAGYfmpkreFfeNLgs +++ ++++d + +++t+d+ +FF++LLPPI+ AGY++ r Ff NLgs mKIAA0267 160 shelnnVQDNemlrkVTFDPEVFFNILLPPIIFYAGYSLKRRHFFRNLGS 209 ILlFAvvGTlinAfvlGlsLYgIcl...iggfgsidIgLLdnLlFGslIS IL +A +GT i+ fv+G ++Yg + ++ g +d + d LlFG+++S mKIAA0267 210 ILAYAFLGTAISCFVIGSIMYGCVTlmkVTGQLAGDFYFTDCLLFGAIVS 259 AVDPVaVLavFeElhVnekLyilIFGESLLNDAVtvVLYntfekFiklSD A+DPV+VLa+F El V+ Ly l FGES LNDAV +VL + D mKIAA0267 260 ATDPVTVLAIFHELQVDVELYALLFGESVLNDAVAIVLSSSIVAYQPAGD 309 asdeavtivdvveGcvsfFvvtlGvGlLvGVvfGflvafitrfTkhirYP + +++ ++ F+ ++ + G+ G++ a++t+fTk + + mKIAA0267 310 N-SHTFDVTAMFKS-IGIFLGIFSGSFAMGAATGVVTALVTKFTKLREFQ 357 vIEPlfvllisYlSYLlAEtlhlSGILAlifCGitmkkYveaNiSreSet E ++ +l s LlAE G +A +fCGit +Y + N S eS+ mKIAA0267 358 LLETGLFFLMSWSTFLLAEAWGFTGVVAVLFCGITQAHYTYNNLSTESQH 407 TikYfmKmlsSlSEtlIFifLGvSlVs.enhewnwplaFvvvTlvfCvAR k + +l l+E++IF ++G+ l++ +nh +n +Fvv + + mKIAA0267 408 RTKQLFELLNFLAENFIFSYMGLTLFTfQNHVFNP--TFVVGAFIAIF-- 453 WCAVFPLSQFVNWiYRvlgvltLswilNeFrSvkvelpfkDQlvifyaGl + R+ + Ls lN+ r ++ + Q ++ +aGl mKIAA0267 454 -------------LGRAANIYPLSLLLNLGR--RSKIGSNFQHMMMFAGL 488 RGAVafaLallldekifpaKklFvtTtLvVvffTVIfQGlTIkplvevLk RGA afaLa + + a +TtL +vffTV ++G+ + ++ +L mKIAA0267 489 RGAMAFALA--IRDTATYARQMMFSTTLLIVFFTVWVFGGGTTAMLSCLH 536 vkkddkskekinEelhlrllDHllpgIEDicGqygHdklid........K ++ + s + hl D + + + ++ + mKIAA0267 537 IRVGVDS-----DQEHLGVPDNER-------------RTTKaesawlfrM 568 lnkfdkkylkkvlirrnspkssikiva....vyhklnlkqaIslvee... + +fd+ ylk l+ p+ + a ++++ l +qa + +e ++ mKIAA0267 569 WYNFDHNYLKPLLTHSGPPLTT-TLPAccgpIARCLTSPQAYENQEQlkd 617 .......GerrkllsfvgtnStdNivnvDFstPepsnsepivsYFLREnv ++++ ++ +l+ + + t ++ ++ mKIAA0267 618 ddsdlilNDGDISLTYGDS------------TVNTESATAS--------- 646 sAvglpalSsedkeeeiRdtEDmvtHHiLstnlykprQrlqsrYsrhvLk +++ ++ d L + l +l r r vL mKIAA0267 647 -----APRRFMGNS--SED--------ALDRELTFGDHELVIRGTRLVLP 681 pvpnE<-* + +E mKIAA0267 682 MDDSE 686 //