hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01806/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0267  ( 700 res)   mbh01806

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Na_H_Exchanger Sodium/hydrogen exchanger family         344.8   9.4e-100   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Na_H_Exchanger   1/1      77   534 ..     1   451 []   344.8 9.4e-100

Alignments of top-scoring domains:
Na_H_Exchanger: domain 1 of 1, from 77 to 534: score 344.8, E = 9.4e-100
                   *->avillvlallaglvfllarrlgplPpvvglilaGillGpsglglqim
                      +++l +++l ++l+++   r+  l+++ + +++G+l+G  +      
   mKIAA0267    77    ILLLTLTILTIWLFKHRRARF--LHETGLAMIYGLLVGLVLRY---- 117  

                   mflpvepdl..................................s.el..k
                     ++v++d+++ + + + ++++++   + +++  + + +++ +s+el+++
   mKIAA0267   118 -GIHVPSDVnnvtlscevqsspttllvnvsgkfyeytlkgeisShELnnV 166  

                   vealfpadveldlevlaelGlilLlFlaGleldlrelrkngksilllall
                   ++     +v++d+ev+++++l++++F+aG+ l  r++++n++sil++a+l
   mKIAA0267   167 QDNEMLRKVTFDPEVFFNILLPPIIFYAGYSLKRRHFFRNLGSILAYAFL 216  

                   gvllpflliGlllallllglalfl.gllvlgipllealffGaalsatspv
                   g+++++++iG +++  ++  ++  +g+l ++++++++l+fGa++sat+pv
   mKIAA0267   217 GTAISCFVIGSIMY--GCVTLMKVtGQLAGDFYFTDCLLFGAIVSATDPV 264  

                   vvlaiLkergrlntrlgtlilgesvlnDavavvlLavllala.segggev
                   +vlai+  +  ++ +l+ l++gesvlnDava+vl + ++a ++++  +++
   mKIAA0267   265 TVLAIF-HELQVDVELYALLFGESVLNDAVAIVLSSSIVAYQpAGDNSHT 313  

                   gglsdlglllliflvvalgglllglvfpwllrlltrftdtrgydgdrele
                      +  +  + ifl ++ g+++ g++ + +++l+t+ft++r+    + le
   mKIAA0267   314 FDVTAMFKSIGIFLGIFSGSFAMGAATGVVTALVTKFTKLRE---FQLLE 360  

                   vllvlalallaallaellGlsgilGaFlaGlvlsrlnyafrneklseksr
                   + l++++++ ++llae++G+ g+++++++G++++  +y ++n  ls +s+
   mKIAA0267   361 TGLFFLMSWSTFLLAEAWGFTGVVAVLFCGITQA--HYTYNN--LSTESQ 406  

                   t.lepfgymlsglfiplFFvlvGlsldlsvllfdqlgpsgtls.hlslll
                   ++++++++ l +l++ ++F ++Gl l+             t+++h ++  
   mKIAA0267   407 HrTKQLFELLNFLAENFIFSYMGLTLF-------------TFQnHVFNPT 443  

                   lvllllvaillgKllgvfllarllnkFrrgklslrealivgllllqRGev
                   +v+++ +ai+lg++  +++l++lln+ rr k+++  ++++++++l RG++
   mKIAA0267   444 FVVGAFIAIFLGRAANIYPLSLLLNLGRRSKIGSNFQHMMMFAGL-RGAM 492  

                   slalaaiglqlgglidreliytllvivvllttlvqGltlkpllkk<-*
                   ++ala +  ++   ++r++++++++++v++t++v+G+ ++++l +   
   mKIAA0267   493 AFALAIRDTAT---YARQMMFSTTLLIVFFTVWVFGGGTTAMLSC    534  

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