hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02016/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0262  ( 824 res)   mph02016

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           30.2    4.6e-05   1
FYVE     FYVE zinc finger                               -13.1       0.17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1     245   286 ..     1    50 []    30.2  4.6e-05
FYVE       1/1     234   292 ..     1    77 []   -13.1     0.17

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 245 to 286: score 30.2, E = 4.6e-05
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt
                      C+ICl +++ ++     i+ CgH      fC +C++++ls ++++++
   mKIAA0262   245    CPICLYPPTAAK-----ITRCGHI-----FCWACILHYLSLsEKTWS 281  

                   .CplC<-*
                   +Cp+C   
   mKIAA0262   282 kCPIC    286  

FYVE: domain 1 of 1, from 234 to 292: score -13.1, E = 0.17
                   *->phWvpDeevsnCmrCgkpFtk.ltkRrHHCRaCGrifCgsCssktvl
                       + + + ev +C++C  p t   ++R      CG+ifC  C  + ++
   mKIAA0262   234    QVRICSHEVPSCPICLYPPTAaKITR------CGHIFCWACILHYLS 274  

                   lpylgiaallkndviekpvRVCdsCydrlnk<-*
                   l ++           +k    C  Cy++ +k   
   mKIAA0262   275 LSEKTW---------SK----CPICYSSVHK    292  

//