hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm04144/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0261  ( 1285 res)   mpm04144

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WAPL     Wings apart-like protein                       919.7   8.2e-273   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WAPL       1/1     730  1094 ..     1   387 []   919.7 8.2e-273

Alignments of top-scoring domains:
WAPL: domain 1 of 1, from 730 to 1094: score 919.7, E = 8.2e-273
                   *->VRhVKeanqlqEiGEyQEfdDDveYILSaLqssnAPlkTRCLSAisL
                      V+hVK++n+++E+GE+QEf+DD+eY+LS+L+s++ Pl+TRCLS+isL
   mKIAA0261   730    VQHVKHFNDVVEFGENQEFTDDIEYLLSGLKSTQ-PLNTRCLSVISL 775  

                   AtKCmmPaFRmHvRAHGvVtkfFKALsDsqeDdsLgLCTsAimYiLSrDk
                   AtKC+mP+FRmH+RAHG+V+++FK+L+Dsq++++L+LCT+A+mYiLSrD+
   mKIAA0261   776 ATKCAMPSFRMHLRAHGMVAMVFKTLDDSQHHQNLSLCTAALMYILSRDR 825  

                   LNmDLDRdSLeLminLLeiekveqasEdklldekdldKnkqkVrELCEei
                   LNmDLDR+SL+Lmi+LLe+e  ++as++kll+ekd++K+k+k+r+LCE++
   mKIAA0261   826 LNMDLDRASLDLMIRLLELE--QDASSAKLLNEKDMNKIKEKIRRLCETV 873  

                   kekqevGGkgvHlDlRKeslTtGsLAmEtLLSLTSkRANGdWFKeELRnL
                   ++k        HlDl  e++TtG+LAmEtLLSLTSkRA GdWFKeELR+L
   mKIAA0261   874 HNK--------HLDL--ENITTGHLAMETLLSLTSKRA-GDWFKEELRLL 912  

                   GGLeHivkkveecvdlvadnaddiDWqeklvaslliveRCLRVLEsVsvf
                   GGL+Hiv+kv+ecvd++++++ d    eklvasl+++eRCLRVLEsV+v+
   mKIAA0261   913 GGLDHIVDKVKECVDHLSRDDED---EEKLVASLWGAERCLRVLESVTVH 959  

                   NkkNQafLishrsgiLissLakllqvcerriqqypedevkkylsDSKPLP
                   N++NQ++Li++++++Li s+ak+lq+ce++iqqy+++e +++++DS PLP
   mKIAA0261   960 NPENQSYLIAYKDSQLIISSAKALQHCEDLIQQYNRAENSICVADSNPLP 1009 

                   HqnvkehvGvalrdlLapmlrvLINLTHdFddAqnelGasklGqqegvie
                    qnv++hvG+a++d+++++++vL+NLT+d     ne+G++k+G+qeg+i+
   mKIAA0261  1010 YQNVTNHVGKAVEDCMRAIIGVLLNLTND-----NEWGSTKTGEQEGLIG 1054 

                   nalnllLqvAnYlPqecvFDirvLvLtLLiNLversaaNR<-*
                   +a+n++Lqv++YlPqe++FDirvL+L+LLiNLve+sa+NR   
   mKIAA0261  1055 TAMNCVLQVPKYLPQEQRFDIRVLGLGLLINLVEYSARNR    1094 

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