hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm11192/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0259 ( 1569 res) mpm11192 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- BRCT breast cancer carboxy-terminal domain 373.9 9.6e-108 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BRCT 1/8 60 145 .. 1 93 [] 5.5 54 BRCT 2/8 157 233 .. 1 93 [] 60.2 2.7e-13 BRCT 3/8 251 328 .. 1 93 [] 78.5 8e-19 BRCT 4/8 409 487 .. 1 93 [] 65.6 6.1e-15 BRCT 5/8 607 680 .. 1 93 [] 25.0 0.01 BRCT 6/8 700 785 .. 1 93 [] 46.9 2.6e-09 BRCT 7/8 958 1037 .. 1 93 [] 59.0 6.1e-13 BRCT 8/8 1312 1391 .. 1 93 [] 46.3 4.1e-09 Alignments of top-scoring domains: BRCT: domain 1 of 8, from 60 to 145: score 5.5, E = 54 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrk. ++f + + ++e ++ e i++l + ++ ++ mKIAA0259 60 QEPFLVKFLKSS-------DNsEcFFKALESIKELQSEDYlQIITDe 99 ....kl.pttthviv.spegkkletdnrsstkllkaialgipiVteeWll + + +++ ++ i+++++g +++ ++lg++iV ++ ++ mKIAA0259 100 ealkIReNDKSLYICdRFSGTVFD----------HLKQLGCRIVGPQVVT 139 dclkkg<-* c++ + mKIAA0259 140 FCMRHQ 145 BRCT: domain 2 of 8, from 157 to 233: score 60.2, E = 2.7e-13 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk +++++t+++t+ +d+ +r+e++++++++GG+v ++ mKIAA0259 157 NMIMSDVTVSCTS------LDkDkREEVHKYVQMMGGRVYrD----- 192 l.pttthviv.spegkkletdnrsstkllkaialgipiVteeWlldclkk l+ ++th+i+++ + kk+ a l++pi+ ++W++ +++k mKIAA0259 193 LnVSVTHLIAgEVGSKKYL----------VAANLKKPILLPSWIKTLWEK 232 g<-* mKIAA0259 233 S 233 BRCT: domain 3 of 8, from 251 to 328: score 78.5, E = 8e-19 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk ++f g+ +++tG +++ +r+ ++ l ++GG +++++ + mKIAA0259 251 CPIFLGCIICVTG------LNgIhRKTVQQLTAKHGGQYMgQLKMN- 290 lpttthviv.spegkkletdnrsstkllkaialgipiVteeWlldclkkg ++th+iv++p g+k+e +a+++++++Vt +W+ d+++kg mKIAA0259 291 --ECTHLIVqEPKGQKYE----------CARRWNVHCVTLQWFHDSIEKG 328 <-* mKIAA0259 - - BRCT: domain 4 of 8, from 409 to 487: score 65.6, E = 6.1e-15 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk ++l++g++++l+G f++ ++d+l++li + GG +++++ mKIAA0259 409 EDLLDGCRIYLCG------FSgRkLDKLRRLINSGGGVRFnQLNE-- 447 lpttthviv.spegkkletdnrsstkllkaialgipiVteeWlldclkkg ++thviv++ ++ + + + +++ ++V Wll+c+ kg mKIAA0259 448 --DVTHVIVgDYDDDVRQFW--------SKSSHRPHVVGAKWLLECFTKG 487 <-* mKIAA0259 - - BRCT: domain 5 of 8, from 607 to 680: score 25.0, E = 0.01 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk ++lf+ ++f + G f+ e++ + ++i+++ Gk+++ +sr mKIAA0259 607 EGLFSQKSFLVLG------FSvEnKCNIVDIIREHAGKIVsLPSR-- 645 lpttthviv.spegkkletdnrsstkllkaialgipiVteeWlldclkkg + v g++++ +Vt Wl+ c++++ mKIAA0259 646 --IVADYAVvPLLGCEVD-------------VTVGEVVTNTWLVTCIDNQ 680 <-* mKIAA0259 - - BRCT: domain 6 of 8, from 700 to 785: score 46.9, E = 2.6e-09 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrk. + ++++++++++ ++ + +rd l +l+ lG+ v + + rk mKIAA0259 700 VTPLEDCVISFS------QCVgAeRDSLVFLANHLGASVQeFFVRKa 740 ...kl.pttthviv.spegkkletdnrsstkllkaialgipiVteeWlld + +k th+iv++p g+k+e +a+++ +p V+++Wll+ mKIAA0259 741 nakKGmLASTHLIVkEPTGSKYE----------AAKKWSLPAVNISWLLE 780 clkkg<-* + g mKIAA0259 781 TARIG 785 BRCT: domain 7 of 8, from 958 to 1037: score 59.0, E = 6.1e-13 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk +k+++ ++++++ k +++ +el ++ +lG+++ s+++ mKIAA0259 958 RKPLDSVVVCVS------KKLsKkQSELNGVAASLGAEYRwSFDE-- 996 lpttthviv.spegkkletdnrsst.kllkaialgipiVteeWlldclkk t+th+i++ ++ +++++ a+++g++iV+e+Wll+c ++ mKIAA0259 997 --TVTHFIYqGRANDS--------NrEYKSAKERGVHIVSEHWLLECAQE 1036 g<-* mKIAA0259 1037 Y 1037 BRCT: domain 8 of 8, from 1312 to 1391: score 46.3, E = 4.1e-09 *->sklfkgltfvltGddiegkfd.e.rdelkeliealGGkvt.svsrkk +k+ k +f ++ +++++r ++ +li+ lGG v+++++ mKIAA0259 1312 RKVKKQYVFQMSS------LNsQeRIDYCRLIKDLGGSVIeKQC--- 1349 l.pttthviv.spegkkletdnrsst.kllkaialgipiVteeWlldclk +p++th +v+ p ++k+l+ a g+++++ ++l +c mKIAA0259 1350 SdPSCTHMVVgYPLR----------NeKYLASMAAGKWVLHRSYLDACKT 1389 kg<-* +g mKIAA0259 1390 AG 1391 //