hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mib/mib19092/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0256  ( 1125 res)   mib19092

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd4   110.9    2.4e-29   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Ribosomal_L7Ae   1/1     736   838 ..     1   100 []   110.9  2.4e-29

Alignments of top-scoring domains:
Ribosomal_L7Ae: domain 1 of 1, from 736 to 838: score 110.9, E = 2.4e-29
                   *->daveellkkAlkagk.lvlGlkevtKalrrgeakLviiAedvdpeek
                      ++++++ ++  ka+++lv+Gl+evtK+++ ++ k+vii++++++++ 
   mKIAA0256   736    ERIYQKDPVRAKARRrLVMGLREVTKHMKLNKIKCVIISPNCEKIQS 782  

                   kk..d.TLipalcklseknVPyvrvpskaeLGeligkprgdvsvlaivda
                   k + d++L   +++++e+++P+v++ ++++LG++++k ++ vsv++i+++
   mKIAA0256   783 KGglDeALYNVIAMAREQEIPFVFALGRKALGRCVNKLVP-VSVVGIFNY 831  

                   gdskdlv<-*
                     +  l+   
   mKIAA0256   832 FGAESLF    838  

//