hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01566/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0254  ( 1031 res)   mbg01566

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PXA      Domain associated with PX domains              281.0    8.9e-80   1
PX       PhoX homologous domain, present in p47phox a    96.5    3.1e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PXA        1/1     129   307 ..     1   226 []   281.0  8.9e-80
PX         1/1     567   698 ..     1   142 []    96.5  3.1e-24

Alignments of top-scoring domains:
PXA: domain 1 of 1, from 129 to 307: score 281.0, E = 8.9e-80
                   *->paqLeeeLesiIskIirdYVqsWYkkisvSeDasFlkeirqtlkyil
                      ++qLe e++++I++Iird+V+sWY+  svS +++F+ e+++++k+++
   mKIAA0254   129    ERQLEQEINRTIQMIIRDFVLSWYR--SVSHEPAFEAEMEAAMKGLV 173  

                   aelkrrlsrqDsaelissklleIlkklistiedalEavlrkas.pqepit
                   +el+rr+s +Ds++l + +l++++++l+s+i+ a+Ea++ + s p++p+ 
   mKIAA0254   174 QELRRRMSIVDSHALTQRVLTLCGCHLQSYIQ-AKEATAKEQScPVQPSQ 222  

                   eidlqiaetaedNYKihkaLsekenEltKEvCRDLvCtsPKDEEkyvRql
                   ++d+++ +ta     +h+a+s +  E+t                 y R++
   mKIAA0254   223 LWDAYCQVTA-----PHPAMSCPTTEVT-----------------YARGI 250  

                   velLLklLlPedelesrlhDDDsPLRLFGRGKnERPWPsKsvrvllrEvL
                   v+l+Lk L+P+++le+r+                       +r++++Ev+
   mKIAA0254   251 VNLILKELVPKPHLETRT-----------------------GRHVVVEVI 277  

                   atavilplIsklSdPDtiNlviIllfsesr<-*
                   +++vilplIsklSdPD+i+l ++++fs++r   
   mKIAA0254   278 TCNVILPLISKLSDPDWIHLILVSIFSKYR    307  

PX: domain 1 of 1, from 567 to 698: score 96.5, E = 3.1e-24
                   *->dniaivavveeetsgkkrgdgkhyyyvieietstned.........v
                        i+   +++ +t +++ g g h y+++ ++++t ++++++++ +++
   mKIAA0254   567    VVIQNLRITGTITAREHSGTGFHPYTLYTVKYETVLNgenssglqqL 613  

                   eewtvyRRYsdFleLhskLlkkfpqek.......rrriiPplPekkllgr
                    ++tv RRY++Fl+L+++L++k   +k  ++ +++++ +P lP  +    
   mKIAA0254   614 AYHTVNRRYREFLNLQTRLEEKPDLRKfiknvkgPKKLFPDLPFGN---- 659  

                   yreraekesmkvkkslnnfseefiekRrrgLerYLqkllnhPelinhyrv
                                     ++++ +e R+  Le++L++l+ +Pe+ n    
   mKIAA0254   660 ------------------MDSDRVEARKSLLESFLKQLCAIPEIGN---- 687  

                   sevvleFLess<-*
                   se+v+eFL  +   
   mKIAA0254   688 SEEVQEFLALN    698  

//