hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01566/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0254  ( 1031 res)   mbg01566

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PXA      PXA domain                                     294.1    1.7e-84   1
PX       PX domain                                       98.2    1.6e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PXA        1/1     129   307 ..     1   204 []   294.1  1.7e-84
PX         1/1     566   698 ..     1   133 []    98.2  1.6e-25

Alignments of top-scoring domains:
PXA: domain 1 of 1, from 129 to 307: score 294.1, E = 1.7e-84
                   *->eaqLekeLnsiIskilrdYVqsWYkKisvSeDasFlkeieqtlksil
                      e+qLe+e+n++I++i+rd+V+sWY+  svS +++F+ e+e+++k+++
   mKIAA0254   129    ERQLEQEINRTIQMIIRDFVLSWYR--SVSHEPAFEAEMEAAMKGLV 173  

                   lelkkrlskqDsaslivlklyeilkklistiedakEAvlrkas.pqekit
                   +el++r+s  Ds++l + +l++++++l+s+i+ akEA++   s p++++ 
   mKIAA0254   174 QELRRRMSIVDSHALTQRVLTLCGCHLQSYIQ-AKEATAKEQScPVQPSQ 222  

                   eidlqyketaedNYKphkaLekkenEltKEvCRDLvCtsPKDEEkylRkl
                   ++d+++ +ta     ph+a++ +  E+t                 y R++
   mKIAA0254   223 LWDAYCQVTA-----PHPAMSCPTTEVT-----------------YARGI 250  

                   velLLkfLlPedelesklvGrvllrEvLAtvvilplIsklSdPdfinlvi
                   v+l+Lk L+P+++le+++ Gr++++Ev++++vilplIsklSdPd+i+l +
   mKIAA0254   251 VNLILKELVPKPHLETRT-GRHVVVEVITCNVILPLISKLSDPDWIHLIL 299  

                   illfskse<-*
                   +++fsk++   
   mKIAA0254   300 VSIFSKYR    307  

PX: domain 1 of 1, from 566 to 698: score 98.2, E = 1.6e-25
                   *->dsili.vvvvdpetsrkkegskkhtyyvyeittktn...........
                      ++++++ ++++ +t r++ g++ h+y++y+++++t  +++++++ ++
   mKIAA0254   566    PVVIQnLRITGTITAREHSGTGFHPYTLYTVKYETVlngenssglqq 612  

                   .kewsVkRRYsdFeeLhekLlrkfpa.........lgrilPplPpKklfg
                     +++V RRY++F++L+++L++k   ++  ++ +++++ +P lP  +   
   mKIAA0254   613 lAYHTVNRRYREFLNLQTRLEEKPDLrkfiknvkgPKKLFPDLPFGN--- 659  

                   ryrkeslemtsvkhssnnfdeefiekRrkgLeeyLqrllqhPelsnesev
                                     +d + +e R+ +Le +L++l+ +Pe+ n se+
   mKIAA0254   660 ------------------MDSDRVEARKSLLESFLKQLCAIPEIGN-SEE 690  

                   vleFLesd<-*
                   v+eFL  +   
   mKIAA0254   691 VQEFLALN    698  

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