hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mid/mid06092/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0251 ( 721 res) mid06092 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pyridoxal_deC Pyridoxal-dependent decarboxylase conse -112.2 2.4e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pyridoxal_deC 1/1 112 406 .. 1 399 [] -112.2 2.4e-06 Alignments of top-scoring domains: Pyridoxal_deC: domain 1 of 1, from 112 to 406: score -112.2, E = 2.4e-06 *->PgylrpllpeaaPikpeslldileDieknimpGvthWhsPnfhayfp y l+ e++ + +il+D + t W + + y mKIAA0251 112 --YISTLDKEKLRKLTT---RILSD---T-----TLWL-RRIFRYEN 144 agnSypslLGdmLsdaINcngFtwessPAcTELEvvvmdwlgkmlglPke +c++F e+ ++ l+k+ l mKIAA0251 145 -----------------GCAYFHEEE---------REG--LAKICRLA-- 164 flgssgsqGGGvlqgggSESnLlallAARtkwlrrmkargkpldeseIlg +s R+ + +g+ + + mKIAA0251 165 -IHS------------------------RYEDF---VVDGFNVLY---NK 183 KLVlYtSdqaHsSvmeKaakiagVktdnlrlipsded...ngkmrgddLe K+V+Y S+ a+ + + + +g+ l +p++ ++ ++m+++ Le mKIAA0251 184 KPVIYLSAAARPGLGQYLCNQLGLPFPCLCRVPCNTMfgsQHQMDVAFLE 233 kaIeedkerGLiPffVcATlGTTvsgaFDnlqelgdicaklgietGydlW k+I +d+erG P+ ++A++GT +g +D + +l ++c+ y++W mKIAA0251 234 KLIKDDVERGRLPLLLVANAGTAAVGHTDKIGRLKELCEQ------YGIW 277 lHVDAAyaGsAfIcPefRhplewlfGiEra..........DSisfnPHKw lHV G + + ++++++++ ++ DS +++P w mKIAA0251 278 LHVE----G-------VNL---ATLALGYVsssvlaatkcDSMTLTPGLW 313 mlvll.dCsalwvKdksaLqdalsvnpeYLkhndkqsdvavDfktwqIpl ++ ++ + +l d+ aL +l + L s++ +D mKIAA0251 314 LGLPAvPAVTLYKHDDPAL--TL---VAGLT-----SNKPAD-------- 345 SRgnrfriLKlWfvlRsyGveglqnhIrehvelAkyfedlvrk.dgrdFe + r+L lW+ l +G g ++I + + l++ + + ++k d++ + mKIAA0251 346 ----KLRALPLWLSLQYLGLDGIVERIKHACHLSQRLQESLKKvDHI-KI 390 ivadpernlglVcFrlK<-* +v e ++ V+Fr mKIAA0251 391 LVE-DELSSPVVVFRFF 406 //