hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01493/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0249  ( 115 res)   mph01493

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LNS2     LNS2 (Lipin/Ned1/Smp2)                          -3.6    4.6e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LNS2       1/1       1    60 [.     1   159 []    -3.6  4.6e-05

Alignments of top-scoring domains:
LNS2: domain 1 of 1, from 1 to 60: score -3.6, E = 4.6e-05
                   *->vViSDIDGTITkSDvLGHvlpiiGkDPWthaGVadLyrkiqenGYkI
                                                                     
   mKIAA0249     -    ----------------------------------------------- -    

                   iYLTaRaiGQadrTrsYLsqvkQdGknLPdGpViLSPdrlfaALkREvIe
                                                                     
   mKIAA0249     - -------------------------------------------------- -    

                   kkPeeFKiacLrdIrnlFppdngnpFyAGFGNritDvisYraVgvppsrI
                    kPe+FKi cL+dI+nlF+p +++pFyA+FGNr++Dv++Y++Vgvp  rI
   mKIAA0249     1 -KPEKFKIECLNDIKNLFAP-SRQPFYAAFGNRPNDVYAYTQVGVPDCRI 48   

                   FtInpkgevhqe<-*
                   Ft+npkge+ qe   
   mKIAA0249    49 FTVNPKGELIQE    60   

//