hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg12530/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0248  ( 1803 res)   mbg12530

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    316.2    2.2e-90   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1     642   830 ..     1   226 []   316.2  2.2e-90

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 642 to 830: score 316.2, E = 2.2e-90
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                      +kn+kkll+ g+++fnqkPkkGiqfLqekg+l ++  ++ +evA++l
   mKIAA0248   642    IKNKKKLLITGTEQFNQKPKKGIQFLQEKGLLTIP--MDNTEVAQWL 686  

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                   +          e+++l+kk+iG+++    d++n ++L++fv++f+F+g++
   mKIAA0248   687 R----------ENPRLDKKMIGEFVS---DRKNMDLLESFVSTFSFQGLR 723  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   ldeALR +Le frLPGEa  I Rlle F e++  cN ++f+         
   mKIAA0248   724 LDEALRLYLEAFRLPGEAPVIHRLLEVFTEHWRSCNGSPFA--------- 764  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       n Da++ LaY++IMLNTD+Hn+nv+k++a     +Mt+e+F+kNl+
   mKIAA0248   765 ----NSDACFALAYAVIMLNTDQHNHNVRKQNA-----PMTLEEFRKNLK 805  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   g+n    +g+d+ ++ Le++Y++Ikn+ei   
   mKIAA0248   806 GVN----GGKDFEQDILEDMYHAIKNEEI    830  

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