hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg12530/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0248  ( 1803 res)   mbg12530

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    370.4   1.9e-107   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1     642   830 ..     1   221 []   370.4 1.9e-107

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 642 to 830: score 370.4, E = 1.9e-107
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle
                      +k++kk li+g+++FNqkPkkGi++L++kgll++++d++++A++L+ 
   mKIAA0248   642    IKNKKKLLITGTEQFNQKPKKGIQFLQEKGLLTIPMDNTEVAQWLR- 687  

                   eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks
                   e+++LdKk+iGef++  d++n ++L++Fv+ +F+F+gl+LdeALRl+L++
   mKIAA0248   688 ENPRLDKKMIGEFVS--DRKNMDLLESFVS-TFSFQGLRLDEALRLYLEA 734  

                   FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa
                   FRLPGEa++I R+le F+e +  c  N+++f+n+             D++
   mKIAA0248   735 FRLPGEAPVIHRLLEVFTEHWRSC--NGSPFANS-------------DAC 769  

                   yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg
                   + L+Y++IMLNTD+H N++V+k++++MTle+F++N++            g
   mKIAA0248   770 FALAYAVIMLNTDQH-NHNVRKQNAPMTLEEFRKNLK------------G 806  

                   indGgDlprefLtelYesIkneei<-*
                   +n+G+D+++++L+++Y++Ikneei   
   mKIAA0248   807 VNGGKDFEQDILEDMYHAIKNEEI    830  

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