hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12222/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0247  ( 324 res)   mpm12222

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CCP      Domain abundant in complement control protei    60.6      2e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CCP        1/1      64   124 ..     1    79 []    60.6    2e-13

Alignments of top-scoring domains:
CCP: domain 1 of 1, from 64 to 124: score 60.6, E = 2e-13
                   *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv
                      Cp Pp   ++enG +++++++     k++ + Gs+++y C +GY+l+
   mKIAA0247    64    CPlPP---EPENGGYICHPRP----CKDPLTAGSVIEYLCAEGYMLK 103  

                   GgsqpekSrestsstitCtsn.WspppsgplPtC<-*
                   G+           +++tC +++W+p ++    +C   
   mKIAA0247   104 GD----------YKYLTCKNGeWTPAME---VSC    124  

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