hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12222/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0247  ( 324 res)   mpm12222

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sushi    Sushi domain (SCR repeat)                       53.6    4.4e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sushi      1/1      64   124 ..     1    64 []    53.6  4.4e-12

Alignments of top-scoring domains:
Sushi: domain 1 of 1, from 64 to 124: score 53.6, E = 4.4e-12
                   *->CpppPdieNGrvsss....kttyeypvGdtvtytCneGYrlvG.sss
                      Cp pP++eNG ++ ++++ k+  +   G++++y C eGY+l+G+ ++
   mKIAA0247    64    CPLPPEPENGGYICHprpcKDPLTA--GSVIEYLCAEGYMLKGdYKY 108  

                   itCtedggGgWsppllgelPkC<-*
                   +tC  +  G+W+p++   +++C   
   mKIAA0247   109 LTCK-N--GEWTPAM---EVSC    124  

//