hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm11210/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0246 ( 1789 res) mpm11210 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LINK Link (Hyaluronan-binding) 176.6 2.4e-48 1 EGF Epidermal growth factor-like domain. 145.0 7.9e-39 17 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/17 2 35 .. 1 32 [] -2.5 4.2e+02 EGF 2/17 40 79 .. 1 32 [] 21.2 0.14 EGF 3/17 83 122 .. 1 32 [] 26.3 0.0043 EGF 4/17 126 165 .. 1 32 [] 13.2 18 EGF 5/17 169 207 .. 1 32 [] 12.6 20 EGF 6/17 513 549 .. 1 32 [] -6.4 9e+02 EGF 7/17 550 587 .. 1 32 [] 17.5 1.9 EGF 8/17 597 631 .. 1 32 [] 20.4 0.25 EGF 9/17 638 673 .. 1 32 [] 15.4 8 EGF 10/17 677 715 .. 1 32 [] 22.7 0.052 EGF 11/17 719 758 .. 1 32 [] 23.6 0.028 EGF 12/17 762 801 .. 1 32 [] 10.5 30 EGF 13/17 1188 1225 .. 1 32 [] 24.3 0.017 EGF 14/17 1235 1269 .. 1 32 [] 17.3 2.2 EGF 15/17 1277 1308 .. 1 32 [] 16.7 3.2 EGF 16/17 1312 1349 .. 1 32 [] 16.2 4.7 EGF 17/17 1353 1392 .. 1 32 [] 22.7 0.05 LINK 1/1 1424 1519 .. 1 107 [] 176.6 2.4e-48 Alignments of top-scoring domains: EGF: domain 1 of 17, from 2 to 35: score -2.5, E = 4.2e+02 *->eCapCsnGgtEqnGtCi.....sytC....CpgpGytg.rCe<-* +C +C +G C ++++++ C++++C+ pG++g+ C mKIAA0246 2 DC-GCVHG------LCDnrpgsGGVCqqgtCA-PGFQGrFCN 35 EGF: domain 2 of 17, from 40 to 79: score 21.2, E = 0.14 *->eCa......pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe< C +++ +pC+ + ++C+ ++ +C C+ +G++g++ +C+ mKIAA0246 40 NCGstglaqPCHSD-----AHCViqegVARCvCH-DGFEGngfSCK 79 -* mKIAA0246 - - EGF: domain 3 of 17, from 83 to 122: score 26.3, E = 0.0043 *->eCa.....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe< +C+++++++Cs++ ++C++++ ++++C C+ G++g+++ C+ mKIAA0246 83 PCSrpdrgGCSEN-----AECVpgdlgTHHCiCH-KGWSGdgrICV 122 -* mKIAA0246 - - EGF: domain 4 of 17, from 126 to 165: score 13.2, E = 18 *->eCa.....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe< eC +++++C+ + + C +++ +C+C+ G+ g++ C mKIAA0246 126 ECGldtrgGCHAD-----ALCSyvgpgQSRCtCK-LGFAGngyECS 165 -* mKIAA0246 - - EGF: domain 5 of 17, from 169 to 207: score 12.6, E = 20 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<- +C ++++C+ +tC +++ C+Cp p + g++ +C mKIAA0246 169 PCRvgngGCHGL-----ATCKavgggQRVCtCP-PHFGGdgfSCY 207 * mKIAA0246 - - EGF: domain 6 of 17, from 513 to 549: score -6.4, E = 9e+02 *->eCa.........pCsnGgtEqnGtCi....sytCCpgpGytg.rCe< C +++ + +++Cs tC ++ + CCp G+ g+ Ce mKIAA0246 513 SCVyrsglsfsrGCSY-------TCAkkiqVPDCCP--GFFGtLCE 549 -* mKIAA0246 - - EGF: domain 7 of 17, from 550 to 587: score 17.5, E = 1.9 *->eCa.....pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-* +C ++ ++ Cs + G+C+++ + +C+C+ +G++g+ Ce mKIAA0246 550 PCPgglggVCSGH-----GQCQdrflgNGECrCQ-EGFHGtACE 587 EGF: domain 8 of 17, from 597 to 631: score 20.4, E = 0.25 *->eCa...pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-* C++ +C++G C+++ ++ +C C+ +G++g rC mKIAA0246 597 TCSgvcDCDHG------LCQeglrgNGSCvCH-AGWQGlRCD 631 EGF: domain 9 of 17, from 638 to 673: score 15.4, E = 8 *->eCa.pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<-* C + C+++ + Ci ++ + + C C+ +Gy+g++++C mKIAA0246 638 QCPkKCDPN-----ANCIqdsagIPACvCA-AGYSGngsYCS 673 EGF: domain 10 of 17, from 677 to 715: score 22.7, E = 0.052 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<- +Ca+++++Cs+ + C++ ++ tC+C+ +Gytg+++ C+ mKIAA0246 677 PCAsghgGCSPY-----ANCTkvapgQRTCtCQ-DGYTGdgeLCQ 715 * mKIAA0246 - - [output cut off at A = 10 top alignments] //