hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00105/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0244  ( 1184 res)   mbh00105

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TFS2M    Domain in the central regions of transcripti   172.8    3.2e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TFS2M      1/1      67   167 ..     1   118 []   172.8  3.2e-47

Alignments of top-scoring domains:
TFS2M: domain 1 of 1, from 67 to 167: score 172.8, E = 3.2e-47
                   *->dkvRdkcqemLlkalqkesdpeeleaagdekkkltaldptelAvqiE
                      ++vR++++++L+k+l++++++ +            + ++ ++A++iE
   mKIAA0244    67    QSVRHSLKDILMKRLTDSNLKIP------------EEKAAKVATKIE 101  

                   aelfsvlaqdefgttdkkYknKyRSlyfNLKDkkNpdLRrkVLnGEItpe
                   +elfs     +f++td+kYknKyRSl+fNLKD+kN+ L++kVL+GE+tp+
   mKIAA0244   102 KELFS-----FFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPD 146  

                   kLvtMtaeELASdeLkelrek<-*
                   +L++M++eELAS+eL+++r++   
   mKIAA0244   147 HLIRMSPEELASKELAAWRRR    167  

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