hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00105/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0244  ( 1184 res)   mbh00105

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TFIIS_M  Transcription factor S-II (TFIIS), central d   182.7    5.7e-51   1
SPOC     SPOC domain                                    156.3    5.4e-43   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TFIIS_M    1/1      65   178 ..     1   133 []   182.7  5.7e-51
SPOC       1/1     347   453 ..     1   131 []   156.3  5.4e-43

Alignments of top-scoring domains:
TFIIS_M: domain 1 of 1, from 65 to 178: score 182.7, E = 5.7e-51
                   *->tgdsvRdKcrelLddaLvkdsdespkgemesvrntldeVtAcdpekl
                      +++svR++++++L+++L++++ ++p +               +++k+
   mKIAA0244    65    IRQSVRHSLKDILMKRLTDSNLKIPEE---------------KAAKV 96   

                   AveIEeelfkClfveagttdkkYKnkyRSiifNLkDkkNpdLrrkVlnGe
                   A +IE+elf+  f   ++td+kYKnkyRS++fNLkD+kN  L++kVl Ge
   mKIAA0244    97 ATKIEKELFS-FF---RDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGE 142  

                   ItPerLatMtpeEmASdeLkkerekitkealrehql<-*
                   +tP++L++M+peE+AS+eL+ +r++++++ ++++++   
   mKIAA0244   143 VTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEK    178  

SPOC: domain 1 of 1, from 347 to 453: score 156.3, E = 5.4e-43
                   *->WkGlLalksvadfpikahfvsGdilKeidekvldklLPdedtgpqlr
                      WkG++++ sva+f++ka++vsG      ++ +l+++LPd     +++
   mKIAA0244   347    WKGFINMPSVAKFVTKAYPVSG------SPEYLTEDLPD-----SIQ 382  

                   itgRlrldqvkkylvklrisvtkPNevavvlflPssedisdvssedtnll
                   ++gR+++++v++y+ k++ s tk  e++vv+f+P +e       ed+ ++
   mKIAA0244   383 VGGRISPQTVWDYVEKIKASGTK--EICVVRFTPVTE-------EDQISY 423  

                   relvsYLksKqraGvislpergskqngrdlyifP<-*
                   ++l+ Y++s++r+Gv++++++    +++d+y++P   
   mKIAA0244   424 TLLFAYFSSRKRYGVAANNMK----QVKDMYLIP    453  

//