hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj02648/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0242  ( 194 res)   mpj02648

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UBX      Domain present in ubiquitin-regulatory prote   111.3    1.1e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UBX        1/1       1    81 [.     1    97 []   111.3  1.1e-28

Alignments of top-scoring domains:
UBX: domain 1 of 1, from 1 to 81: score 111.3, E = 1.1e-28
                   *->pkknpsisqcrlQiRlpdGsrlvrkFpssetLeevyefVeLqkseal
                         + s + +r+Q+RlpdGs+++++Fps+++Lee+++f+      a+
   mKIAA0242     1    ---DRS-TIARIQFRLPDGSSFTNQFPSDAPLEEARQFA------AQ 37   

                   tdgndpaevynadFtLnspfPRrtftkdDelKklleldellPsssLlLep
                   t+gn++++     F+L+++fPRr+ft++D+++ ll+l el+Ps+s++L p
   mKIAA0242    38 TVGNTYGN-----FSLATMFPRREFTREDYKRRLLDL-ELAPSASVVLLP 81   

                   <-*
                      
   mKIAA0242     -     -    

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