hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj02648/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0242  ( 194 res)   mpj02648

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UBX      UBX domain                                      94.2    2.5e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UBX        1/1       1    81 [.     1    90 []    94.2  2.5e-24

Alignments of top-scoring domains:
UBX: domain 1 of 1, from 1 to 81: score 94.2, E = 2.5e-24
                   *->ekaedvcrlqiRlPDGsRlvrrFnssdtlqdvydfvdshrygadepe
                       +++  +r+q+RlPDGs+++++F+s+++l++ ++f +++ +g+++ +
   mKIAA0242     1    -DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQF-AAQTVGNTYGN 45   

                   dYkheFeFsLltpfPrrlltkldesktLkeagllpnstlvlep<-*
                          FsL+t+fPrr++t++d+++ L++++l p++++vl p   
   mKIAA0242    46 -------FSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP    81   

//