hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00448/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0239  ( 842 res)   mpf00448

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                 72.7    4.5e-17   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/2     214   260 ..     1    39 []    50.4  2.4e-10
PHD        2/2     323   378 ..     1    39 []    30.1  0.00029

Alignments of top-scoring domains:
PHD: domain 1 of 2, from 214 to 260: score 50.4, E = 2.4e-10
                   *->yC.vCgk......g.llqCdkgCdrwyHv.Clgppleepdg.wyCpr
                      +C+vC+++++++++++++Cd +C++++H+ C+g+ +  p+g+w+C  
   mKIAA0239   214    VCdVCRSpegedgNeMVFCD-KCNVCVHQaCYGILKV-PTGsWLCRT 258  

                   Ck<-*
                   C    
   mKIAA0239   259 CA    260  

PHD: domain 2 of 2, from 323 to 378: score 30.1, E = 0.00029
                   *->yC.vCgk..g.llqCd.kgCdrwyHv.Clgpple..........epd
                       C++C++ +g+++qC+ ++C +++Hv+C+   +++ ++   +++e++
   mKIAA0239   323    SCsLCKEctGtCIQCSmPSCITAFHVtCAFDRGLemrtiladndEVK 369  

                   g.wyCprCk<-*
                   ++ +C +++   
   mKIAA0239   370 FkSLCQEHS    378  

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