hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00448/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0239  ( 842 res)   mpf00448

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD-finger                                      62.4    9.9e-15   1
C1_1     Phorbol esters/diacylglycerol binding domain    -4.5       0.85   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1_1       1/1     207   254 ..     1    55 []    -4.5     0.85
PHD        1/1     214   262 ..     1    51 []    62.4  9.9e-15

Alignments of top-scoring domains:
C1_1: domain 1 of 1, from 207 to 254: score -4.5, E = 0.85
                   *->HhFvhrwnfkqptfCdhCgellwgslgkqGlkCswCklnvHkrChek
                              ++  + Cd+C+++  g  g  ++ C+ C+++vH+ C+  
   mKIAA0239   207    -----I-EYDEDVVCDVCRSPE-GEDGNEMVFCDKCNVCVHQACYGI 246  

                   VppeCgcg<-*
                   ++   g +   
   mKIAA0239   247 LKVPTGSW    254  

PHD: domain 1 of 1, from 214 to 262: score 62.4, E = 9.9e-15
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
                       C vC++p +++g+++++CD+C++++H+aC+g+     p+g WlC+ 
   mKIAA0239   214    VCDVCRSPEGEDGNEMVFCDKCNVCVHQACYGILKV--PTGSWLCRT 258  

                   Ctpk<-*
                   C  +   
   mKIAA0239   259 CALG    262  

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