hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00260/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0238  ( 518 res)   mbg00260

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Xan_ur_permease Permease family                         250.1    3.1e-71   1
7TMR-DISM_7TM   7TM diverse intracellular signalling    -43.3       0.63   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Xan_ur_permease   1/1      28   404 ..     1   443 []   250.1  3.1e-71
7TMR-DISM_7TM     1/1     325   508 ..     1   212 []   -43.3     0.63

Alignments of top-scoring domains:
Xan_ur_permease: domain 1 of 1, from 28 to 404: score 250.1, E = 3.1e-71
                   *->gqllllGL..QhllamfaativVPllvgdalClglsaeslaqlisat
                      g  + l+L +Qh l++f++ti VP l++da+C g+    ++qli + 
   mKIAA0238    28    GLPFPLSLleQHYLTCFSGTIAVPFLLADAMCVGDDQWATSQLIGTI 74   

                   llasGigTllQllayGigrifGirlPiylGsSFafvtPlialgalmiaiG
                   +++ Gi TllQ++       fG rlP +++s+Faf +P  a+ +l +  +
   mKIAA0238    75 FFCVGITTLLQTT-------FGCRLPLFQASAFAFLAPARAILSLDKWKC 117  

                   sagrgqgv........ledigialaglfgallvagvlftlisltglrgrL
                   ++++  +v +++ +  +  ++  +++++ga++ ++++ ++i+l+gl+g L
   mKIAA0238   118 NTTEI-TVangtaellEHIWHPRIQEIQGAIIMSSLIEVVIGLLGLPGAL 166  

                   arlfPPvVtgpvvllIGLsLapiavkgagggwaaigdgllTllvgsldll
                    r+++P+++ p v lIGLs  + a   ag +w                  
   mKIAA0238   167 LRYIGPLTITPTVALIGLSGFQAAGERAGKHW------------------ 198  

                   llavvvlavilllsvfthilkgffrqipiLiGiiaGwllalfmGpSivnl
                     ++++l + l+  +                        +++ +    ++
   mKIAA0238   199 --GIAMLTIFLVTDYG-----------------------YYART----DA 219  

                   speGseARtDkNSLavvsdapwfqlpspfkfgtPldalgafnpgliltvl
                    ++            v+  apwf +p+pf++g+P       +++ ++ +l
   mKIAA0238   220 RKG------------VLLVAPWFKVPYPFQWGMPT-----VSAAGVIGML 252  

                   avalvaivEstGdiravakvvgrdlkppqykpdlrRglladGlatllsGl
                   ++++++i+Es+Gd++a+a+++  +++p   +++++Rg++++Gl+++l G 
   mKIAA0238   253 SAVVASIIESIGDYYACARLSCAPPPP---IHAINRGIFVEGLSCVLDGI 299  

                   fGaGfPtTtyaeNiGvvalTkVySrrvgvtAgVilillGlipkfaaLfss
                   fG+G + T+ ++NiGv+ +TkV Srrv+++++ + + lG+++kf+aLf+s
   mKIAA0238   300 FGTGNGSTSSSPNIGVLGITKVGSRRVIQYGAALMLGLGMVGKFSALFAS 349  

                   IPspVlGGvmlvmfGmiaasGvsilsrvdldysarNllIiavslvlGlgi
                   +P+pVlG+    +fGmi a+G+s+l+++dl+ s+rNl++ ++s+++Gl +
   mKIAA0238   350 LPDPVLGALFCTLFGMITAVGLSNLQFIDLN-SSRNLFVLGFSIFFGLVL 398  

                   stvpei<-*
                   + + +    
   mKIAA0238   399 PSYLRQ    404  

7TMR-DISM_7TM: domain 1 of 1, from 325 to 508: score -43.3, E = 0.63
                   *->ralifglllGillllgfYnLflylsrrkdksyLyyalyillfllyql
                      r + +g  l++ l +   +  l+ s++ d++   ++  ++ + ++++
   mKIAA0238   325    RVIQYGAALMLGLGMVGKFSALFASLP-DPVLGALFCTLFGM-ITAV 369  

                   slsglafeylDwpnipffaqkklaylllvllalffllFlrsflylksssr
                    ls+l f          + ++  + l+++ + +ff l l s+l ++   +
   mKIAA0238   370 GLSNLQF---------IDLNS-SRNLFVLGFSIFFGLVLPSYLRQNPLVT 409  

                   rldrllgilalllflaillalfltdylvanriaqvlvllfilillllgik
                    +  + +il +ll  a++              a++l   +  +    gik
   mKIAA0238   410 GITGIDQILNVLLTTAMFVGGC---------VAFILDNTIPGTPEERGIK 450  

                   awrkgyrdArlfliaflvflvgglvSdllgllglipnnitltsyalllgl
                    w kg + + + l ++   ++ + + +++  +  +++ +    ++++ g+
   mKIAA0238   451 KWKKGVSKGSKSLDGMESYNLPFGM-NIIKKYRCFSYLP---ISPTFAGY 496  

                   vlevlllslaLadER<-*
                   +  ++  s   ++ R   
   mKIAA0238   497 TWKGFGKSE--NS-R    508  

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