hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg11214/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0237  ( 263 res)   mbg11214

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)      54.7    1.2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/1     125   228 ..     1    92 []    54.7  1.2e-11

Alignments of top-scoring domains:
C2: domain 1 of 1, from 125 to 228: score 54.7, E = 1.2e-11
                   *->tLtvkiisArnLp.........DPYVkvs...........kTkvvkk
                      +L+v +i+Ar+L +++++++ +  Y+k +   ++    ++kTkv kk
   mKIAA0237   125    QLEVEVIEARGLTpkpgskslpATYIKAYllengacvakkKTKVAKK 171  

                   tlsgfNPvWnEesetFeFevpp..s.LeieVyDk.......dfiGrvtip
                   t+    P + +    + F+  p+++ L++ V+ + ++ +++ f+G ++i 
   mKIAA0237   172 TC---DPLYQQ---ALLFDEGPqgKvLQVIVWGDygrmdhkCFMGMAQIM 215  

                   pnnahqhsadglihlsell.ggrh.kl<-*
                                 l+el+ +   +++   
   mKIAA0237   216 --------------LDELDlSAAVtGW    228  

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