hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg02771/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0236 ( 1852 res) mbg02771 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 517.4 6e-151 41 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/41 112 136 .. 1 23 [] 11.1 18 ZnF_C2H2 2/41 173 195 .. 1 23 [] 23.6 0.028 ZnF_C2H2 3/41 202 227 .. 1 23 [] 24.3 0.017 ZnF_C2H2 4/41 232 256 .. 1 23 [] 16.0 4.9 ZnF_C2H2 5/41 259 281 .. 1 23 [] 17.2 2.2 ZnF_C2H2 6/41 372 394 .. 1 23 [] 17.2 2.3 ZnF_C2H2 7/41 400 420 .. 1 23 [] 10.9 18 ZnF_C2H2 8/41 428 451 .. 1 23 [] 26.7 0.0033 ZnF_C2H2 9/41 462 484 .. 1 23 [] 25.7 0.0062 ZnF_C2H2 10/41 495 520 .. 1 23 [] 22.1 0.077 ZnF_C2H2 11/41 525 549 .. 1 23 [] 14.5 7.2 ZnF_C2H2 12/41 552 575 .. 1 23 [] 17.8 1.6 ZnF_C2H2 13/41 581 604 .. 1 23 [] 19.4 0.5 ZnF_C2H2 14/41 610 632 .. 1 23 [] 23.3 0.035 ZnF_C2H2 15/41 638 660 .. 1 23 [] 24.1 0.02 ZnF_C2H2 16/41 666 688 .. 1 23 [] 26.7 0.0031 ZnF_C2H2 17/41 694 716 .. 1 23 [] 20.7 0.21 ZnF_C2H2 18/41 721 744 .. 1 23 [] 23.6 0.028 ZnF_C2H2 19/41 753 776 .. 1 23 [] 16.8 3 ZnF_C2H2 20/41 782 805 .. 1 23 [] 15.8 5.2 ZnF_C2H2 21/41 1048 1068 .. 1 23 [] 9.2 29 ZnF_C2H2 22/41 1078 1098 .. 1 23 [] 9.3 28 ZnF_C2H2 23/41 1196 1216 .. 1 23 [] -0.9 4e+02 ZnF_C2H2 24/41 1274 1294 .. 1 23 [] 7.0 51 ZnF_C2H2 25/41 1304 1327 .. 1 23 [] 18.2 1.1 ZnF_C2H2 26/41 1340 1363 .. 1 23 [] 19.2 0.57 ZnF_C2H2 27/41 1369 1391 .. 1 23 [] 23.9 0.023 ZnF_C2H2 28/41 1397 1420 .. 1 23 [] 18.1 1.3 ZnF_C2H2 29/41 1426 1449 .. 1 23 [] 13.3 10 ZnF_C2H2 30/41 1455 1478 .. 1 23 [] 24.0 0.021 ZnF_C2H2 31/41 1497 1520 .. 1 23 [] 19.8 0.38 ZnF_C2H2 32/41 1523 1545 .. 1 23 [] 23.8 0.024 ZnF_C2H2 33/41 1549 1572 .. 1 23 [] 18.5 0.93 ZnF_C2H2 34/41 1589 1611 .. 1 23 [] 14.8 6.7 ZnF_C2H2 35/41 1617 1639 .. 1 23 [] 20.8 0.19 ZnF_C2H2 36/41 1645 1667 .. 1 23 [] 23.6 0.027 ZnF_C2H2 37/41 1673 1695 .. 1 23 [] 27.0 0.0027 ZnF_C2H2 38/41 1701 1724 .. 1 23 [] 25.2 0.0089 ZnF_C2H2 39/41 1730 1752 .. 1 23 [] 28.4 0.001 ZnF_C2H2 40/41 1758 1780 .. 1 23 [] 23.6 0.027 ZnF_C2H2 41/41 1786 1808 .. 1 23 [] 18.8 0.78 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 41, from 112 to 136: score 11.1, E = 18 *->ykCpigCgksfssk.aLkrHmr..vH<-* y C+ C +sf ++ L H+ +++H mKIAA0236 112 YFCER-CEQSFAEPtLLSVHQCteTH 136 ZnF_C2H2: domain 2 of 41, from 173 to 195: score 23.6, E = 0.028 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp+ C + f +++aLk H ++H mKIAA0236 173 LPCPV-CRQEFVQPqALKSHFKIH 195 ZnF_C2H2: domain 3 of 41, from 202 to 227: score 24.3, E = 0.017 *->ykCpi.gCgksfssk.aLkrHmr.vH<-* + Cp++gC +s +++ L++H+r++H mKIAA0236 202 FSCPEsGCVFSAEDRkGLQNHLRqTH 227 ZnF_C2H2: domain 4 of 41, from 232 to 256: score 16.0, E = 4.9 *->ykCpi.gCgksfssk.aLkrHmrvH<-* C+++gC+ f s++ ++ H + H mKIAA0236 232 VPCSFrGCSLLFGSQqGMELHRQAH 256 ZnF_C2H2: domain 5 of 41, from 259 to 281: score 17.2, E = 2.2 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C++ s+ + +++H+r+H mKIAA0236 259 FHCSH-CSFMGSNVkLFRQHQRSH 281 ZnF_C2H2: domain 6 of 41, from 372 to 394: score 17.2, E = 2.3 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp+ C+++f+ +++L++H+ H mKIAA0236 372 HMCPE-CKRCFKKRtHLVEHLHLH 394 ZnF_C2H2: domain 7 of 41, from 400 to 420: score 10.9, E = 18 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp C+k f+sk+ Lk H+ mKIAA0236 400 LQCPN-CQKFFTSKsKLKTHLL-- 420 ZnF_C2H2: domain 8 of 41, from 428 to 451: score 26.7, E = 0.0033 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++Cp+ C++s ++aL+rHm ++H mKIAA0236 428 HRCPL-CHYSAVERnALNRHMAsMH 451 ZnF_C2H2: domain 9 of 41, from 462 to 484: score 25.7, E = 0.0062 *->ykCpigCgksfssk.aLkrHmrvH<-* y Cp+ C + f+ +aLk+H+++H mKIAA0236 462 YACPV-CREEFRLSqALKEHLKSH 484 ZnF_C2H2: domain 10 of 41, from 495 to 520: score 22.1, E = 0.077 *->ykCpi.gCgksfssk.aLkrHmr.vH<-* ++C ++gC ++ ++++a+ +H++++H mKIAA0236 495 LHCFQeGCTYVAPDRkAFLKHLKeIH 520 [output cut off at A = 10 top alignments] //