hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file: /cdna4/rodent/full/goal/mbg/mbg02771/w3open/interpro/cnk_1/seq.in
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Query: mKIAA0236 ( 1852 res) mbg02771
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C2H2 Zinc finger, C2H2 type 420.9 1.2e-122 41
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-C2H2 1/41 112 136 .. 1 24 [] 18.9 0.12
zf-C2H2 2/41 173 195 .. 1 24 [] 22.0 0.014
zf-C2H2 3/41 202 227 .. 1 24 [] 14.8 2.1
zf-C2H2 4/41 232 256 .. 1 24 [] 8.5 15
zf-C2H2 5/41 259 281 .. 1 24 [] 11.8 7.1
zf-C2H2 6/41 372 394 .. 1 24 [] 20.3 0.047
zf-C2H2 7/41 400 422 .. 1 24 [] 14.8 2.1
zf-C2H2 8/41 428 451 .. 1 24 [] 20.1 0.053
zf-C2H2 9/41 462 484 .. 1 24 [] 26.1 0.00082
zf-C2H2 10/41 495 520 .. 1 24 [] 4.7 34
zf-C2H2 11/41 525 549 .. 1 24 [] 11.9 7
zf-C2H2 12/41 552 575 .. 1 24 [] 16.0 0.89
zf-C2H2 13/41 581 604 .. 1 24 [] 6.4 24
zf-C2H2 14/41 610 632 .. 1 24 [] 20.1 0.052
zf-C2H2 15/41 638 660 .. 1 24 [] 22.0 0.014
zf-C2H2 16/41 666 688 .. 1 24 [] 26.4 0.00065
zf-C2H2 17/41 694 716 .. 1 24 [] 16.6 0.59
zf-C2H2 18/41 721 744 .. 1 24 [] 21.3 0.023
zf-C2H2 19/41 753 776 .. 1 24 [] 7.3 19
zf-C2H2 20/41 782 805 .. 1 24 [] 11.4 7.8
zf-C2H2 21/41 1048 1071 .. 1 24 [] 17.3 0.37
zf-C2H2 22/41 1078 1101 .. 1 24 [] 21.9 0.016
zf-C2H2 23/41 1196 1219 .. 1 24 [] 7.5 19
zf-C2H2 24/41 1274 1297 .. 1 24 [] 13.7 4.4
zf-C2H2 25/41 1304 1327 .. 1 24 [] 9.5 12
zf-C2H2 26/41 1340 1363 .. 1 24 [] 16.9 0.5
zf-C2H2 27/41 1369 1391 .. 1 24 [] 23.0 0.0073
zf-C2H2 28/41 1397 1420 .. 1 24 [] 21.3 0.022
zf-C2H2 29/41 1426 1449 .. 1 24 [] 8.1 16
zf-C2H2 30/41 1455 1478 .. 1 24 [] 20.9 0.031
zf-C2H2 31/41 1497 1520 .. 1 24 [] 14.4 2.7
zf-C2H2 32/41 1523 1545 .. 1 24 [] 16.9 0.49
zf-C2H2 33/41 1549 1572 .. 1 24 [] 11.0 8.5
zf-C2H2 34/41 1589 1611 .. 1 24 [] 7.8 17
zf-C2H2 35/41 1617 1639 .. 1 24 [] 17.1 0.41
zf-C2H2 36/41 1645 1667 .. 1 24 [] 20.7 0.036
zf-C2H2 37/41 1673 1695 .. 1 24 [] 19.6 0.075
zf-C2H2 38/41 1701 1724 .. 1 24 [] 26.1 0.00081
zf-C2H2 39/41 1730 1752 .. 1 24 [] 32.8 7.7e-06
zf-C2H2 40/41 1758 1780 .. 1 24 [] 26.3 0.0007
zf-C2H2 41/41 1786 1808 .. 1 24 [] 12.0 6.8
Alignments of top-scoring domains:
zf-C2H2: domain 1 of 41, from 112 to 136: score 18.9, E = 0.12
*->ykCpfdCgksFsrksnLkrHlrt..H<-*
y C+ C +sF + L H+ t++H
mKIAA0236 112 YFCE-RCEQSFAEPTLLSVHQCTetH 136
zf-C2H2: domain 2 of 41, from 173 to 195: score 22.0, E = 0.014
*->ykCpfdCgksFsrksnLkrHlrtH<-*
Cp +C + F ++ Lk+H ++H
mKIAA0236 173 LPCP-VCRQEFVQPQALKSHFKIH 195
zf-C2H2: domain 3 of 41, from 202 to 227: score 14.8, E = 2.1
*->ykCpf.dCgksFsrksnLkrHlrt.H<-*
++Cp ++C s +++ L++Hlr +H
mKIAA0236 202 FSCPEsGCVFSAEDRKGLQNHLRQtH 227
zf-C2H2: domain 4 of 41, from 232 to 256: score 8.5, E = 15
*->ykCpf.dCgksFsrksnLkrHlrtH<-*
C+f++C F ++ ++ H++ H
mKIAA0236 232 VPCSFrGCSLLFGSQQGMELHRQAH 256
zf-C2H2: domain 5 of 41, from 259 to 281: score 11.8, E = 7.1
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+ C+ +C + s+ + +++H+r+H
mKIAA0236 259 FHCS-HCSFMGSNVKLFRQHQRSH 281
zf-C2H2: domain 6 of 41, from 372 to 394: score 20.3, E = 0.047
*->ykCpfdCgksFsrksnLkrHlrtH<-*
++Cp +C+++F+ + +L Hl H
mKIAA0236 372 HMCP-ECKRCFKKRTHLVEHLHLH 394
zf-C2H2: domain 7 of 41, from 400 to 422: score 14.8, E = 2.1
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+Cp C+k F++ks Lk+Hl +
mKIAA0236 400 LQCP-NCQKFFTSKSKLKTHLLRE 422
zf-C2H2: domain 8 of 41, from 428 to 451: score 20.1, E = 0.053
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
++Cp C++s + L+rH+ + H
mKIAA0236 428 HRCP-LCHYSAVERNALNRHMASmH 451
zf-C2H2: domain 9 of 41, from 462 to 484: score 26.1, E = 0.00082
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y Cp +C + F+ + Lk Hl++H
mKIAA0236 462 YACP-VCREEFRLSQALKEHLKSH 484
zf-C2H2: domain 10 of 41, from 495 to 520: score 4.7, E = 34
*->ykCpf.dCgksFsrksnLkrHlrt.H<-*
C ++C ++ +++ + +Hl+ H
mKIAA0236 495 LHCFQeGCTYVAPDRKAFLKHLKEiH 520
zf-C2H2: domain 11 of 41, from 525 to 549: score 11.9, E = 7
*->ykCpf.dCgksFsrksnLkrHlrtH<-*
+C ++ C F + + +++H ++H
mKIAA0236 525 VECRHhSCPMLFATAEAMEAHHKSH 549
zf-C2H2: domain 12 of 41, from 552 to 575: score 16.0, E = 0.89
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
+ Cp +C+ ++s+k+ +++H++ +H
mKIAA0236 552 FHCP-HCDFACSNKHLFRKHKKQgH 575
zf-C2H2: domain 13 of 41, from 581 to 604: score 6.4, E = 24
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
+C+ C + ++ ++ H + H
mKIAA0236 581 LRCT-FCPFATFNPVAYQDHVGKmH 604
zf-C2H2: domain 14 of 41, from 610 to 632: score 20.1, E = 0.052
*->ykCpfdCgksFsrksnLkrHlrtH<-*
++C+ +C+ + +k L rH+ H
mKIAA0236 610 HQCS-ECNFATAHKRVLIRHMLLH 632
zf-C2H2: domain 15 of 41, from 638 to 660: score 22.0, E = 0.014
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+kC+ C+ ++++ s L +H+ tH
mKIAA0236 638 HKCE-LCDFTCRDVSYLSKHMLTH 660
zf-C2H2: domain 16 of 41, from 666 to 688: score 26.4, E = 0.00065
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +Cg++ + k+ L H+r+H
mKIAA0236 666 YMCT-ECGYVTKWKHYLSVHMRKH 688
zf-C2H2: domain 17 of 41, from 694 to 716: score 16.6, E = 0.59
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +C +++ r ++L +H+ +H
mKIAA0236 694 YQCN-QCSYRCHRADQLSSHKLRH 716
zf-C2H2: domain 18 of 41, from 721 to 744: score 21.3, E = 0.023
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
+C+ +C +++rk++L++H+ ++H
mKIAA0236 721 LMCE-VCAFACKRKYELQKHMASqH 744
zf-C2H2: domain 19 of 41, from 753 to 776: score 7.3, E = 19
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
y C +C + ++k L +H + +H
mKIAA0236 753 YPCR-YCSYQSRHKQALLSHENCkH 776
zf-C2H2: domain 20 of 41, from 782 to 805: score 11.4, E = 7.8
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
+ C C+++ ++ +L H+r+ H
mKIAA0236 782 FHCA-LCDYRTFSNTTLFFHKRKvH 805
zf-C2H2: domain 21 of 41, from 1048 to 1071: score 17.3, E = 0.37
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
++Cp +C +r + L+ H ++++
mKIAA0236 1048 FRCP-HCPFITRREKALTLHSKSgC 1071
zf-C2H2: domain 22 of 41, from 1078 to 1101: score 21.9, E = 0.016
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
Cp +Cg sF+++ L +H+++++
mKIAA0236 1078 LLCP-ECGASFKQQRGLSTHMMKkC 1101
zf-C2H2: domain 23 of 41, from 1196 to 1219: score 7.5, E = 19
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
+ C+ C +sr s+ ++H ++
mKIAA0236 1196 FHCS-SCTFLCSRLSSITSHVTEgC 1219
zf-C2H2: domain 24 of 41, from 1274 to 1297: score 13.7, E = 4.4
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
++Cp C s+ + +L++H+ ++
mKIAA0236 1274 FSCP-TCPFSCQQERTLRTHQTQgC 1297
zf-C2H2: domain 25 of 41, from 1304 to 1327: score 9.5, E = 12
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
C C + + L+ H++++H
mKIAA0236 1304 LHCG-LCPFTAPAAAALRLHQKRrH 1327
zf-C2H2: domain 26 of 41, from 1340 to 1363: score 16.9, E = 0.5
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
+C dCg +++++ L++H+r +H
mKIAA0236 1340 LQCG-DCGFTCKQSRCLQQHRRLkH 1363
zf-C2H2: domain 27 of 41, from 1369 to 1391: score 23.0, E = 0.0073
*->ykCpfdCgksFsrksnLkrHlrtH<-*
++Cp C+ s +r++ L++H+ +H
mKIAA0236 1369 HQCP-FCDFSTTRRYRLEAHQSRH 1391
zf-C2H2: domain 28 of 41, from 1397 to 1420: score 21.3, E = 0.022
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
C+ C ++F ++s L+ H+ + H
mKIAA0236 1397 IPCS-SCPQTFGTNSKLRLHQLRvH 1420
zf-C2H2: domain 29 of 41, from 1426 to 1449: score 8.1, E = 16
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
+ Cp C++s +++ +rH ++ H
mKIAA0236 1426 HFCP-LCDYSGYLRHDITRHVNScH 1449
zf-C2H2: domain 30 of 41, from 1455 to 1478: score 20.9, E = 0.031
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
++C+ +C Fs+ Lk+H ++H
mKIAA0236 1455 FSCT-QCEAQFSSETALKQHALRrH 1478
zf-C2H2: domain 31 of 41, from 1497 to 1520: score 14.4, E = 2.7
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
C+ +Cg + ++++L+ H r++H
mKIAA0236 1497 LHCS-HCGLLCPSPASLRGHTRKqH 1520
zf-C2H2: domain 32 of 41, from 1523 to 1545: score 16.9, E = 0.49
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+C C++sF ++ L H+r H
mKIAA0236 1523 LECG-ACQESFPNRPALDEHRRQH 1545
zf-C2H2: domain 33 of 41, from 1549 to 1572: score 11.0, E = 8.5
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
++C+ C + + + L +H +H
mKIAA0236 1549 HRCQ-LCSFAARERVGLVKHYLEqH 1572
zf-C2H2: domain 34 of 41, from 1589 to 1611: score 7.8, E = 17
*->ykCpfdCgksFsrksnLkrHlrtH<-*
Cp C+ +++++ L +H + H
mKIAA0236 1589 LCCP-FCDFACRHQLVLDHHVKGH 1611
zf-C2H2: domain 35 of 41, from 1617 to 1639: score 17.1, E = 0.41
*->ykCpfdCgksFsrksnLkrHlrtH<-*
ykC+ dC +s +++ + H r+H
mKIAA0236 1617 YKCT-DCAYSTKNRQKITWHSRIH 1639
zf-C2H2: domain 36 of 41, from 1645 to 1667: score 20.7, E = 0.036
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y C+ C +++ ++s Lk H+r+H
mKIAA0236 1645 YHCH-LCAYACADPSRLKYHMRIH 1667
zf-C2H2: domain 37 of 41, from 1673 to 1695: score 19.6, E = 0.075
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y Cp +Cg++++ +Lk H+ +H
mKIAA0236 1673 YLCP-ECGYKCKWVNQLKYHMTKH 1695
zf-C2H2: domain 38 of 41, from 1701 to 1724: score 26.1, E = 0.00081
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
y+Cp +C ++ +r + L+ H+ t+H
mKIAA0236 1701 YQCP-ECEYCTNRADALRVHRETrH 1724
zf-C2H2: domain 39 of 41, from 1730 to 1752: score 32.8, E = 7.7e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
++C+ +Cgk+F+++ L++Hlr+H
mKIAA0236 1730 FMCE-QCGKAFKTRFLLRTHLRKH 1752
zf-C2H2: domain 40 of 41, from 1758 to 1780: score 26.3, E = 0.0007
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y+C+ +C+++F+ + L++H tH
mKIAA0236 1758 YVCN-VCHRAFRWAAGLRHHALTH 1780
zf-C2H2: domain 41 of 41, from 1786 to 1808: score 12.0, E = 6.8
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+ C C ++ ++k + +H r+H
mKIAA0236 1786 FFCR-LCSYKAKQKFQVVKHVRRH 1808
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