hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00517/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0235  ( 969 res)   mbh00517

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Pumilio  Pumilio-like repeats                           311.9    4.5e-89   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Pumilio    1/8     631   666 ..     1    39 []    39.1  6.1e-07
Pumilio    2/8     667   702 ..     1    39 []    34.3  1.7e-05
Pumilio    3/8     703   738 ..     1    39 []    38.8  7.3e-07
Pumilio    4/8     739   774 ..     1    39 []    41.9  8.4e-08
Pumilio    5/8     775   810 ..     1    39 []    44.7  1.2e-08
Pumilio    6/8     811   846 ..     1    39 []    45.3  8.1e-09
Pumilio    7/8     847   882 ..     1    39 []    37.8  1.5e-06
Pumilio    8/8     890   925 ..     1    39 []    41.8  8.8e-08

Alignments of top-scoring domains:
Pumilio: domain 1 of 8, from 631 to 666: score 39.1, E = 6.1e-07
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                       ++gh++e+s+dq+G+r+iQ+ le+a+++   +++  ++   
   mKIAA0235   631    DLIGHIVEFSQDQHGSRFIQQKLERATPA---ERQIVFN    666  

Pumilio: domain 2 of 8, from 667 to 702: score 34.3, E = 1.7e-05
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      ei    ++L++d +Gn+ViQk++e++s +   qk  +     
   mKIAA0235   667    EILQAAYQLMTDVFGNYVIQKFFEFGSLD---QKLALAT    702  

Pumilio: domain 3 of 8, from 703 to 738: score 38.8, E = 7.3e-07
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                       i+gh+l L+ ++yG+rViQk+le  s +   q+ e+++   
   mKIAA0235   703    RIRGHVLPLALQMYGCRVIQKALESISSD---QQSEMVK    738  

Pumilio: domain 4 of 8, from 739 to 774: score 41.9, E = 8.4e-08
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      e+ gh+l+ +kdq+Gn+V+Qk++e+  +     +++iid   
   mKIAA0235   739    ELDGHVLKCVKDQNGNHVVQKCIECVQPQ---SLQFIID    774  

Pumilio: domain 5 of 8, from 775 to 810: score 44.7, E = 1.2e-08
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      ++kg++  Ls+++yG+rViQ++leh++++   q   i++   
   mKIAA0235   775    AFKGQVFVLSTHPYGCRVIQRILEHCTAE---QTLPILE    810  

Pumilio: domain 6 of 8, from 811 to 846: score 45.3, E = 8.1e-09
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      e++ h ++L++dqyGn+ViQ++leh+ ++   +k +i+    
   mKIAA0235   811    ELHQHTEQLVQDQYGNYVIQHVLEHGRPE---DKSKIVS    846  

Pumilio: domain 7 of 8, from 847 to 882: score 37.8, E = 1.5e-06
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      ei+g++l Ls+++++++V++k++ has +   ++ ++id   
   mKIAA0235   847    EIRGKVLALSQHKFASNVVEKCVTHASRA---ERALLID    882  

Pumilio: domain 8 of 8, from 890 to 925: score 41.8, E = 8.8e-08
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                        +  l++++kdqy+n+V+Qk+++ a ++   q++ i++   
   mKIAA0235   890    GPHSALYTMMKDQYANYVVQKMIDMAEPA---QRKIIMH    925  

//