hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00517/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0235  ( 969 res)   mbh00517

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PUF      Pumilio-family RNA binding repeat              300.8    1.6e-86   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PUF        1/8     631   665 ..     1    35 []    39.3  8.5e-08
PUF        2/8     667   701 ..     1    35 []    33.9  3.8e-06
PUF        3/8     703   737 ..     1    35 []    32.9  7.4e-06
PUF        4/8     739   773 ..     1    35 []    42.3  1.1e-08
PUF        5/8     775   809 ..     1    35 []    48.2  1.8e-10
PUF        6/8     811   845 ..     1    35 []    47.2  3.7e-10
PUF        7/8     847   881 ..     1    35 []    29.2  9.8e-05
PUF        8/8     890   924 ..     1    35 []    37.1  4.1e-07

Alignments of top-scoring domains:
PUF: domain 1 of 8, from 631 to 665: score 39.3, E = 8.5e-08
                   *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-*
                       ++g++v+ s+dq+G++++Q+ le+atp ++q ++   
   mKIAA0235   631    DLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVF    665  

PUF: domain 2 of 8, from 667 to 701: score 33.9, E = 3.8e-06
                   *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-*
                      +i++  +qL+td +Gnyv+Qk++e+++  q+  +    
   mKIAA0235   667    EILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALA    701  

PUF: domain 3 of 8, from 703 to 737: score 32.9, E = 7.4e-06
                   *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-*
                       i+g+++ L+++ yG++v+Qk le  ++ q++ ++   
   mKIAA0235   703    RIRGHVLPLALQMYGCRVIQKALESISSDQQSEMV    737  

PUF: domain 4 of 8, from 739 to 773: score 42.3, E = 1.1e-08
                   *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-*
                      +++g+++++++dq+Gn+v+Qk++e+  p+ +q+i+   
   mKIAA0235   739    ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII    773  

PUF: domain 5 of 8, from 775 to 809: score 48.2, E = 1.8e-10
                   *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-*
                       +kg++ +Lst++yG++v+Q++le++t eq+ +il   
   mKIAA0235   775    AFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPIL    809  

PUF: domain 6 of 8, from 811 to 845: score 47.2, E = 3.7e-10
                   *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-*
                      ++ ++ +qL++dqyGnyv+Q++le++ pe++++i+   
   mKIAA0235   811    ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV    845  

PUF: domain 7 of 8, from 847 to 881: score 29.2, E = 9.8e-05
                   *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-*
                      +i+g+++ Ls+++++++v++k+ ++a+  ++ l++   
   mKIAA0235   847    EIRGKVLALSQHKFASNVVEKCVTHASRAERALLI    881  

PUF: domain 8 of 8, from 890 to 924: score 37.1, E = 4.1e-07
                   *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-*
                      +    l+++++dqy+nyv+Qk++++a p q++ i+   
   mKIAA0235   890    GPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIM    924  

//