hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm08099/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0234 ( 1390 res) mpm08099 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PHD PHD zinc finger 92.5 4.9e-23 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PHD 1/2 162 208 .. 1 39 [] 58.7 7.3e-13 PHD 2/2 1023 1084 .. 1 39 [] 41.6 1.1e-07 Alignments of top-scoring domains: PHD: domain 1 of 2, from 162 to 208: score 58.7, E = 7.3e-13 *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC +C+ C +++++++ll+Cd gCd+ yH+ Cl ppl+++p+g w+Cp+C mKIAA0234 162 VCrMCSRgdedDkLLLCD-GCDDNYHIfCLLPPLPeIPKGvWRCPKC 207 k<-* + mKIAA0234 208 V 208 PHD: domain 2 of 2, from 1023 to 1084: score 41.6, E = 1.1e-07 *->yCvCgk....g.llqCdkgCdrwyHv.Clgpple............. +CvCg+ + + + lqCd C++w+H +C+ p + ++++++ ++++ mKIAA0234 1023 ICVCGQvpagVgALQCD-LCQDWFHGrCVTVPRLlssqrsslpsspl 1068 ....epdg.wyCprCk<-* e d +++Cp C mKIAA0234 1069 lawwEWDTkFLCPLCM 1084 //