hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm08099/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0234  ( 1390 res)   mpm08099

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                    221.6    1.2e-62   1
zf-C5HC2 C5HC2 zinc finger                              111.6    1.5e-29   1
PHD      PHD-finger                                     104.5      2e-27   2
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)            3.4       0.45   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1     163   207 ..     1    50 []     3.4     0.45
PHD        1/2     162   210 ..     1    51 []    69.2  8.5e-17
JmjC       1/1     337   453 ..     1   126 []   221.6  1.2e-62
zf-C5HC2   1/1     543   596 ..     1    59 []   111.6  1.5e-29
PHD        2/2    1023  1086 ..     1    51 []    42.5  9.5e-09

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 163 to 207: score 3.4, E = 0.45
                   *->CrICleelkepsndfplilpC.gHsGslkyfCrsClerwlss..sgn
                      Cr C  ++++++     +l C+g+      ++ +Cl+  l + ++g 
   mKIAA0234   163    CRMCSRGDEDDK-----LLLCdGCD---DNYHIFCLLPPLPEipKGV 201  

                   ttCplC<-*
                   + Cp C   
   mKIAA0234   202 WRCPKC    207  

PHD: domain 1 of 2, from 162 to 210: score 69.2, E = 8.5e-17
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
                       C+ C+++d+  +++ll+CDgCd+ +H++Cl ppl+e+p+g W+Cp+
   mKIAA0234   162    VCRMCSRGDE--DDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPK 206  

                   Ctpk<-*
                   C+ +   
   mKIAA0234   207 CVMA    210  

JmjC: domain 1 of 1, from 337 to 453: score 221.6, E = 1.2e-62
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                      wly+Gm fS ++wHied+++ySinylh+g+pk+WY++P++ ae++e 
   mKIAA0234   337    WLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLE- 382  

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                     ++++k   +p+l +++qpd+ l++lvtl++P++  L  +G+pv r++Q
   mKIAA0234   383 --EVMKKL--TPEL-FDSQPDL-LHQLVTLMNPNT--LMSHGVPVVRTNQ 424  

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   ++GEfV+tfP+ayH++fN G+n+aeavNF   
   mKIAA0234   425 CAGEFVITFPRAYHSGFNQGYNFAEAVNF    453  

zf-C5HC2: domain 1 of 1, from 543 to 596: score 111.6, E = 1.5e-29
                   *->CqiCkttlyLSAvvCs.CspnklvCLeCALRHvkdLCssCepkdltL
                      C++Cktt++LSA++C++C pn lvCL+    H++dLC+ C++++++L
   mKIAA0234   543    CIKCKTTCFLSALACYdC-PNGLVCLS----HINDLCK-CSSSRQYL 583  

                   lYRYtlDeLpsLv<-*
                   +YRYtlDeLp+++   
   mKIAA0234   584 RYRYTLDELPAML    596  

PHD: domain 2 of 2, from 1023 to 1086: score 42.5, E = 9.5e-09
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgpple...........
                      +C vCg++ +  g   lqCD C +wfH+ C+  p   ++++++ +++
   mKIAA0234  1023    IC-VCGQVPA--GVGALQCDLCQDWFHGRCVTVPRLlssqrsslpss 1066 

                   .....eppegkWlCpeCtpk<-*
                   +    ++ + k+lCp C+++   
   mKIAA0234  1067 pllawWEWDTKFLCPLCMRS    1086 

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