hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbp/mbp00073/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0231 ( 815 res) mbp00073 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_TYP Leucine-rich repeats, typical (most populate 94.3 1.4e-23 7 LRR_PS Leucine-rich repeat, plant-specific subfamil 52.9 4.1e-11 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_PS 1/9 521 540 .. 1 24 [] 2.6 5.5e+02 LRR_TYP 1/7 521 548 .. 1 24 [] 6.8 62 LRR_PS 2/9 596 618 .. 1 24 [] 6.5 1.7e+02 LRR_TYP 2/7 596 619 .. 1 24 [] 10.2 24 LRR_PS 3/9 619 641 .. 1 24 [] 4.1 3.5e+02 LRR_PS 4/9 644 666 .. 1 24 [] 4.3 3.3e+02 LRR_TYP 3/7 644 666 .. 1 24 [] 10.3 23 LRR_PS 5/9 667 689 .. 1 24 [] 13.1 24 LRR_TYP 4/7 667 690 .. 1 24 [] 26.0 0.0054 LRR_PS 6/9 690 712 .. 1 24 [] 24.1 0.02 LRR_TYP 5/7 691 712 .. 1 24 [] 8.7 36 LRR_PS 7/9 713 735 .. 1 24 [] 13.2 23 LRR_TYP 6/7 713 736 .. 1 24 [] 26.1 0.0049 LRR_PS 8/9 736 758 .. 1 24 [] 2.6 5.4e+02 LRR_PS 9/9 759 781 .. 1 24 [] 11.3 41 LRR_TYP 7/7 759 782 .. 1 24 [] 20.4 0.25 Alignments of top-scoring domains: LRR_PS: domain 1 of 9, from 521 to 540: score 2.6, E = 5.5e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L++L+Ls++ +P++l++ mKIAA0231 521 LKNLKELYLSGC----VLPEQLSS 540 LRR_TYP: domain 1 of 7, from 521 to 548: score 6.8, E = 62 *->LpnLreLdLsnNqL....tsLPpgaFqg<-* L nL+eL+Ls+ L+++ +sL+ + Fq+ mKIAA0231 521 LKNLKELYLSGCVLpeqlSSLHLEGFQD 548 LRR_PS: domain 2 of 9, from 596 to 618: score 6.5, E = 1.7e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* + +L++L+L ++ L IP s+++ mKIAA0231 596 MVNLKSLELLSCDLE-RIPHSIFS 618 LRR_TYP: domain 2 of 7, from 596 to 619: score 10.2, E = 24 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++nL++L L + L+++P+ +F+ mKIAA0231 596 MVNLKSLELLSCDLERIPHSIFSL 619 LRR_PS: domain 3 of 9, from 619 to 641: score 4.1, E = 3.5e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L +LdL +NnL ++ + ++ mKIAA0231 619 LNNLHELDLKENNLK-TVEEIISF 641 LRR_PS: domain 4 of 9, from 644 to 666: score 4.3, E = 3.3e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L+sL+ L L++Nn+ IP+++g mKIAA0231 644 LPSLSCLKLWHNNIA-YIPAQIGA 666 LRR_TYP: domain 3 of 7, from 644 to 666: score 10.3, E = 23 *->LpnLreLdLsnNqLtsLPpgaFqg<-* Lp+L L L +N++ +P+++ + mKIAA0231 644 LPSLSCLKLWHNNIAYIPAQI-GA 666 LRR_PS: domain 5 of 9, from 667 to 689: score 13.1, E = 24 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L++L L +Nn+ ++P +l+ mKIAA0231 667 LSNLEQLFLGHNNIE-SLPLQLFL 689 LRR_TYP: domain 4 of 7, from 667 to 690: score 26.0, E = 0.0054 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL+ L L++N+++sLP ++F + mKIAA0231 667 LSNLEQLFLGHNNIESLPLQLFLC 690 LRR_PS: domain 6 of 9, from 690 to 712: score 24.1, E = 0.02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* +t+L +LdLs+N+L+ IP+++ mKIAA0231 690 CTKLHYLDLSYNHLT-FIPEEIQY 712 [output cut off at A = 10 top alignments] //