hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp00073/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0231  ( 815 res)   mbp00073

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             89.8    5.4e-23  11

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_1      1/11    476   498 ..     1    25 []     5.2  2.7e+02
LRR_1      2/11    500   522 ..     1    25 []     8.4       82
LRR_1      3/11    523   550 ..     1    25 []    11.7       17
LRR_1      4/11    598   620 ..     1    25 []     7.0  1.4e+02
LRR_1      5/11    621   645 ..     1    25 []    12.5      9.9
LRR_1      6/11    646   668 ..     1    25 []     8.4       80
LRR_1      7/11    669   691 ..     1    25 []    13.9      3.8
LRR_1      8/11    692   714 ..     1    25 []    19.1     0.11
LRR_1      9/11    715   737 ..     1    25 []     8.8       69
LRR_1     10/11    738   760 ..     1    25 []     8.9       67
LRR_1     11/11    761   783 ..     1    25 []    17.1     0.41

Alignments of top-scoring domains:
LRR_1: domain 1 of 11, from 476 to 498: score 5.2, E = 2.7e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL+eL++ + + sl    +p l  l    
   mKIAA0231   476    NLRELHVYH-S-SLV-VDHPALaFLE    498  

LRR_1: domain 2 of 11, from 500 to 522: score 8.4, E = 82
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL++L+L   + +  g +p +  +l+   
   mKIAA0231   500    NLRILRLKF-T-EM-GKIPRWVfHLK    522  

LRR_1: domain 3 of 11, from 523 to 550: score 11.7, E = 17
                   *->nLeeLdLsgCNpslsgs....lpps.l.glp<-*
                      nL+eL+LsgC   l ++  ++l+ +++++l+   
   mKIAA0231   523    NLKELYLSGC--VL-PEqlssLHLEgFqDLK    550  

LRR_1: domain 4 of 11, from 598 to 620: score 7.0, E = 1.4e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL++L+L +C   l+  +p s+ +l    
   mKIAA0231   598    NLKSLELLSC--DLE-RIPHSIfSLN    620  

LRR_1: domain 5 of 11, from 621 to 645: score 12.5, E = 9.9
                   *->nLeeLdLsgCNpslsgs...lppsl.glp<-*
                      nL eLdL   N +l ++ +++ + +++lp   
   mKIAA0231   621    NLHELDLKE-N-NL-KTveeIIS-FqHLP    645  

LRR_1: domain 6 of 11, from 646 to 668: score 8.4, E = 80
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L  L L + N ++   +p+ ++ l+   
   mKIAA0231   646    SLSCLKLWH-N-NIA-YIPAQIgALS    668  

LRR_1: domain 7 of 11, from 669 to 691: score 13.9, E = 3.8
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nLe L L++ N +++ slp  l  ++   
   mKIAA0231   669    NLEQLFLGH-N-NIE-SLPLQLfLCT    691  

LRR_1: domain 8 of 11, from 692 to 714: score 19.1, E = 0.11
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L +LdLs+ N +l+  +p++++ l+   
   mKIAA0231   692    KLHYLDLSY-N-HLT-FIPEEIqYLT    714  

LRR_1: domain 9 of 11, from 715 to 737: score 8.8, E = 69
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL++  + + N +++  lp++l  ++   
   mKIAA0231   715    NLQYFAVTN-N-NIE-MLPDGLfQCK    737  

LRR_1: domain 10 of 11, from 738 to 760: score 8.9, E = 67
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L+ L L++ N sl+ +l+p  + l+   
   mKIAA0231   738    KLQCLLLGR-N-SLT-DLSPLVgELS    760  

LRR_1: domain 11 of 11, from 761 to 783: score 17.1, E = 0.41
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL++L+L g N +l+ +lp +l+g++   
   mKIAA0231   761    NLTHLELTG-N-YLE-TLPVELeGCQ    783  

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