hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg10262/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0230 ( 1431 res) mbg10262 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IGc2 Immunoglobulin C-2 Type 264.0 1.2e-74 4 IG Immunoglobulin 228.1 7.8e-64 4 LRR_TYP Leucine-rich repeats, typical (most populate 118.3 8.3e-31 5 VWC von Willebrand factor (vWF) type C domain 63.9 2e-14 1 LRR_PS Leucine-rich repeat, plant-specific subfamil 36.2 4.5e-06 4 LRRCT Leucine rich repeat C-terminal domain 31.7 0.0001 1 IGv Immunoglobulin V-Type 25.4 0.0079 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_TYP 1/5 13 37 .. 1 24 [] 14.6 6.9 LRR_PS 1/4 38 60 .. 1 24 [] 9.5 70 LRR_TYP 2/5 38 61 .. 1 24 [] 29.6 0.00043 LRR_PS 2/4 62 84 .. 1 24 [] 5.8 2.1e+02 LRR_TYP 3/5 62 85 .. 1 24 [] 24.3 0.017 LRR_PS 3/4 86 108 .. 1 24 [] 7.6 1.2e+02 LRR_TYP 4/5 86 109 .. 1 24 [] 31.8 9.4e-05 LRR_TYP 5/5 110 133 .. 1 24 [] 28.5 0.00095 LRR_PS 4/4 110 133 .. 1 24 [] 20.7 0.2 LRRCT 1/1 145 197 .. 1 55 [] 31.7 0.0001 IGv 1/3 215 272 .. 1 76 [] 9.8 0.31 IGc2 1/4 211 277 .. 1 56 [] 66.4 3.5e-15 IG 1/4 205 289 .. 1 58 [] 52.8 4.5e-11 IGv 2/3 311 367 .. 1 76 [] 12.1 0.18 IGc2 2/4 307 372 .. 1 56 [] 68.4 9.1e-16 IG 2/4 301 383 .. 1 58 [] 69.7 3.6e-16 IGc2 3/4 398 462 .. 1 56 [] 65.5 6.6e-15 IG 3/4 392 473 .. 1 58 [] 53.8 2.2e-11 IGv 3/3 494 549 .. 1 76 [] 3.5 1.3 IGc2 4/4 490 554 .. 1 56 [] 66.9 2.6e-15 IG 4/4 484 565 .. 1 58 [] 54.3 1.5e-11 VWC 1/1 1367 1422 .. 1 75 [] 63.9 2e-14 Alignments of top-scoring domains: LRR_TYP: domain 1 of 5, from 13 to 37: score 14.6, E = 6.9 *->LpnL.reLdLsnNqLtsLPpgaFqg<-* Lp +++LdL +N+++++ pgaF+ mKIAA0230 13 LPRTqQHLDLRFNRIREIQPGAFRR 37 LRR_PS: domain 1 of 4, from 38 to 60: score 9.5, E = 70 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L+sL++L L+nN++ +IP + mKIAA0230 38 LRSLNTLLLNNNQIK-KIPNGAFE 60 LRR_TYP: domain 2 of 5, from 38 to 61: score 29.6, E = 0.00043 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L +L L+nNq++ +P+gaF++ mKIAA0230 38 LRSLNTLLLNNNQIKKIPNGAFED 61 LRR_PS: domain 2 of 4, from 62 to 84: score 5.8, E = 2.1e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L++L+L+ N + +I + ++ mKIAA0230 62 LENLKYLYLYKNEIQ-SIDRQAFK 84 LRR_TYP: domain 3 of 5, from 62 to 85: score 24.3, E = 0.017 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL+ L+L N ++s+ ++aF g mKIAA0230 62 LENLKYLYLYKNEIQSIDRQAFKG 85 LRR_PS: domain 3 of 4, from 86 to 108: score 7.6, E = 1.2e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L sL++L+L++N++ ++ ++ ++ mKIAA0230 86 LASLEQLYLHFNQIE-TLDPESFQ 108 LRR_TYP: domain 4 of 5, from 86 to 109: score 31.8, E = 9.4e-05 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L+ L+L++Nq+++L p+ Fq+ mKIAA0230 86 LASLEQLYLHFNQIETLDPESFQH 109 LRR_TYP: domain 5 of 5, from 110 to 133: score 28.5, E = 0.00095 *->LpnLreLdLsnNqLtsLPpgaFqg<-* Lp+L++L L+nN++t+L pg+F+ mKIAA0230 110 LPKLERLFLHNNRITHLIPGTFSQ 133 LRR_PS: domain 4 of 4, from 110 to 133: score 20.7, E = 0.2 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L++L L+nN+++ IP ++++ mKIAA0230 110 LPKLERLFLHNNRITHLIPGTFSQ 133 LRRCT: domain 1 of 1, from 145 to 197: score 31.7, E = 0.0001 *->NPfnCDCeLrwLlrwlea.qnnealqdpvsslrCasPeslrGqplll N ++CDCe++wL+++l+ +++ q +++C++P + +G +++ mKIAA0230 145 NALHCDCEILWLADLLKTyAQSGNAQA---AATCEYPRRIQGRSVAT 188 llpsefsCp<-* +p e C+ mKIAA0230 189 ITPEELNCE 197 [output cut off at A = 10 top alignments] //