hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg10262/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0230 ( 1431 res) mbg10262 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- An_peroxidase Animal haem peroxidase 708.1 4.2e-209 1 I-set Immunoglobulin I-set domain 418.8 5.2e-122 4 ig Immunoglobulin domain 164.4 1.9e-45 4 V-set Immunoglobulin V-set domain 89.5 6.8e-23 4 LRR_1 Leucine Rich Repeat 59.9 5.4e-14 5 VWC von Willebrand factor type C domain 43.3 5.4e-09 1 LRRCT Leucine rich repeat C-terminal domain 24.4 0.0027 1 C2-set_2 CD80-like C2-set immunoglobulin domain 10.3 0.05 3 PSP94 Beta-microseminoprotein (PSP-94) -42.1 0.49 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_1 1/5 16 39 .. 1 25 [] 4.8 3.1e+02 LRR_1 2/5 40 63 .. 1 25 [] 15.1 1.6 LRR_1 3/5 64 87 .. 1 25 [] 13.6 4.7 LRR_1 4/5 88 111 .. 1 25 [] 17.5 0.33 LRR_1 5/5 112 135 .. 1 25 [] 14.5 2.5 LRRCT 1/1 172 197 .. 1 26 [] 24.4 0.0027 ig 1/4 213 272 .. 1 65 [] 36.3 6.8e-07 C2-set_2 1/3 199 281 .. 1 101 [] 4.0 0.23 I-set 1/4 199 287 .. 1 97 [] 82.2 1.1e-20 V-set 1/4 198 289 .. 1 130 [] 19.8 0.0065 ig 2/4 309 367 .. 1 65 [] 56.7 4.9e-13 C2-set_2 2/3 297 376 .. 1 101 [] 4.1 0.23 I-set 2/4 295 383 .. 1 97 [] 110.0 4.4e-29 V-set 2/4 295 383 .. 1 130 [] 30.0 5.4e-05 ig 3/4 400 457 .. 1 65 [] 30.6 3.6e-05 C2-set_2 3/3 388 460 .. 1 101 [] 3.8 0.24 V-set 3/4 387 470 .. 1 130 [] 15.1 0.019 I-set 3/4 386 473 .. 1 97 [] 134.4 2e-36 ig 4/4 492 549 .. 1 65 [] 41.5 1.9e-08 V-set 4/4 478 565 .. 1 130 [] 26.0 0.00087 I-set 4/4 478 565 .. 1 97 [] 96.9 3.9e-25 An_peroxidase 1/1 692 1245 .. 1 619 [] 708.1 4.2e-209 VWC 1/1 1367 1422 .. 1 84 [] 43.3 5.4e-09 PSP94 1/1 1339 1423 .. 1 114 [] -42.1 0.49 Alignments of top-scoring domains: LRR_1: domain 1 of 5, from 16 to 39: score 4.8, E = 3.1e+02 *->nLeeLdLsgCNpslsgslpps.l.glp<-* + ++LdL+ N ++ ++++p++++ l+ mKIAA0230 16 TQQHLDLRF-N-RI-REIQPGaFrRLR 39 LRR_1: domain 2 of 5, from 40 to 63: score 15.1, E = 1.6 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +L +L L++ N ++ + +p++++++l mKIAA0230 40 SLNTLLLNN-N-QI-KKIPNGaFeDLE 63 LRR_1: domain 3 of 5, from 64 to 87: score 13.6, E = 4.7 *->nLeeLdLsgCNpslsgslpps.l.glp<-* nL++L+L N +++ s+ +++gl mKIAA0230 64 NLKYLYLYK-N-EIQ-SIDRQaFkGLA 87 LRR_1: domain 4 of 5, from 88 to 111: score 17.5, E = 0.33 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +Le L+L+ N +++ +l p+++++lp mKIAA0230 88 SLEQLYLHF-N-QIE-TLDPEsFqHLP 111 LRR_1: domain 5 of 5, from 112 to 135: score 14.5, E = 2.5 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +Le L L++ N +++ +l p++++ l mKIAA0230 112 KLERLFLHN-N-RIT-HLIPGtFsQLE 135 LRRCT: domain 1 of 1, from 172 to 197: score 24.4, E = 0.0027 *->dlrCasPeslrGqplldlppsdfsCp<-* +++C++P + +G+++++++p++++C+ mKIAA0230 172 AATCEYPRRIQGRSVATITPEELNCE 197 ig: domain 1 of 4, from 213 to 272: score 36.3, E = 6.8e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty G++v +tC++ +g+p +++ Wlrn+ +l ++++ ++g+ mKIAA0230 213 GNTVYFTCRA--EGNPKPEIIWLRNNNeLSmKTDSRlNLLDDGT--- 254 qtsLtitnvtpeDggtYtCvv<-* L i+n+++ D+g+Y C++ mKIAA0230 255 ---LMIQNTQEADEGVYQCMA 272 C2-set_2: domain 1 of 3, from 199 to 281: score 4.0, E = 0.23 *->peIeppasllegeksenlevvatCvlpysagGkPapritWyldgkel p I+ ++ + + +v +tC a G+P p i+W+++++el mKIAA0230 199 PRITSEPQDADVT--SGNTVYFTCR----AEGNPKPEIIWLRNNNEL 239 vpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsygal + t+s + g+ ++ + + e++ C +++ a+ mKIAA0230 240 ------SMKTDSRLNLLDDGTLMI------QNTQEADEGVYQCMAKNVAG 277 rgsk<-* + mKIAA0230 278 EAKT 281 I-set: domain 1 of 4, from 199 to 287: score 82.2, E = 1.1e-20 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P++t +p+d+ V+ G ++ f+C+++G+P+P++ W++++ +ls mKIAA0230 199 PRITSEPQDADVTSGNTVYFTCRAEGNPKPEIIWLRNNNELSM--KT 243 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq ++r++ dg tL+I+n q +D+G+Y C A+N aGea++ e+t + mKIAA0230 244 DSRLNLLDDG-----TLMIQNTQEADEGVYQCMAKNVAGEAKTQ-EVTLR 287 <-* mKIAA0230 - - V-set: domain 1 of 4, from 198 to 289: score 19.8, E = 0.0065 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss +t p v G +v ++C +++ mKIAA0230 198 RPRITS-EPQ----------DADVTSGNTVYFTCRAE---GNP---- 226 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn ++ +++W r ++ ++s+ mKIAA0230 227 KP-EIIWLR---------------------------------NNNELSMK 242 ps.....kgdfsLtIsnlqlsDsGtYyCa.........gggtrLtVl<-* ++++ + +d +L I+n q +D+G+Y C ++ ++ + ++++L l mKIAA0230 243 TDsrlnlLDDGTLMIQNTQEADEGVYQCMaknvageakTQEVTLRYL 289 ig: domain 2 of 4, from 309 to 367: score 56.7, E = 4.9e-13 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq GesvtL Cs+ +g+p +++tW+r++ + + ++ +++g+ mKIAA0230 309 GESVTLECSA--TGHPLPQITWTRGDRtPLpIDPRVNITPSGG---- 349 tsLtitnvtpeDggtYtCvv<-* L i+nv ++D+g+YtC + mKIAA0230 350 --LYIQNVAQSDSGEYTCFA 367 C2-set_2: domain 2 of 3, from 297 to 376: score 4.1, E = 0.23 *->peIeppasllegeksenlevvatCvlpysagGkPapritWyldgkel I+p+ +++ ++ + v+++C sa G+P p+itW +++++ mKIAA0230 297 FVIQPQNTEVLVG----ESVTLEC----SATGHPLPQITWTRGDRTP 335 vpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsygal ++i +++ p+ gly ++ +d g + tC +s+ + mKIAA0230 336 ------LPIDPRVNITPSGGLYIQ------NVAQSDSG-EYTCFASNSVD 372 rgsk<-* + + mKIAA0230 373 SIHA 376 I-set: domain 2 of 4, from 295 to 383: score 110.0, E = 4.4e-29 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvll P+F+++p++ eV +Ges+++eC +tG+P P+++W++++ pl+ mKIAA0230 295 PTFVIQPQNTEVLVGESVTLECSATGHPLPQITWTRGdRTPLPI--- 338 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV ++r+++t +g L I+nv +DsG+YtC A+Ns+ + a+a+ +V mKIAA0230 339 -DPRVNITPSG-----GLYIQNVAQSDSGEYTCFASNSVDSIHATAFIIV 382 q<-* q mKIAA0230 383 Q 383 V-set: domain 2 of 4, from 295 to 383: score 30.0, E = 5.4e-05 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + v q p v +G+svtL C+ + ++ mKIAA0230 295 PTFVIQ--PQ----------NTEVLVGESVTLECSAT----GH---- 321 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn +++W r ++ ++ + + rv ++++ mKIAA0230 322 PLPQITWTR-GDR-----------------------TPLPIDPRVNITPS 347 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* ++ L I+n+ +sDsG Y+C +++ ++ + +V mKIAA0230 348 GG-----LYIQNVAQSDSGEYTCFasnsvdsiHATAFIIVQ 383 ig: domain 3 of 4, from 400 to 457: score 30.6, E = 3.6e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++v ++C ++ g+p++ + W+++g +l + ++ + +++ mKIAA0230 400 GQTVDFQCAAK--GHPQPVIAWTKGGSqLSvDRRHLVLSSGT----- 439 tsLtitnvtpeDggtYtCvv<-* L+i+ v D g Y C++ mKIAA0230 440 --LRISGVALHDQGQYECQA 457 C2-set_2: domain 3 of 3, from 388 to 460: score 3.8, E = 0.24 *->peIeppa.sllegeksenlevvatCvlpysagGkPapritWyldgke +++p+ ++ +eg+ +v ++C +a G+P+p i W ++g + mKIAA0230 388 FTVTPQSrVVIEGQ-----TVDFQC----AAKGHPQPVIAWTKGGSQ 425 lvpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsyga l + + + v S+ +l+ s g l+ q +y+ mKIAA0230 426 L----------------SVDRRHLVLSSGTLRIS----GVALHDQGQYEC 455 lrgsk<-* + +++ mKIAA0230 456 QAVNI 460 V-set: domain 3 of 4, from 387 to 470: score 15.1, E = 0.019 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss q+tvt ++r +v eG++v ++C + + + mKIAA0230 387 QFTVTP-QSR------------VVIEGQTVDFQCAAK---GHP---- 413 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn ++ + W + + + +l + +r+++ + mKIAA0230 414 QP-VIAWTK-GGS----QLSV---------------------DRRHLVLS 436 pskgdfsLtIsnlqlsDsGtYyCa.....gggtrLtVl<-* + +L+Is + l D G Y C+ + g+ ++ l mKIAA0230 437 SG----TLRISGVALHDQGQYECQavniiGSQKVVAHL 470 I-set: domain 3 of 4, from 386 to 473: score 134.4, E = 2e-36 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+Ft p++ +V eG++++f+C ++G+P+P + W+K+G++ls+ mKIAA0230 386 PQFTVTPQSRVVIEGQTVDFQCAAKGHPQPVIAWTKGGSQLSV---- 428 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq ++r+ v +g tL+Is+v D G+Y C+A N G++++ a+LtVq mKIAA0230 429 DRRHLVLSSG-----TLRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQ 473 <-* mKIAA0230 - - ig: domain 4 of 4, from 492 to 549: score 41.5, E = 1.9e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G v L+Cs+ g p++ +tW ++g ++t++ + ++s+++ mKIAA0230 492 GTNVQLPCSS--QGEPEPAITWNKDGVqVTeSGKFHISPEGF----- 531 tsLtitnvtpeDggtYtCvv<-* Lti++v D+g Y Cv+ mKIAA0230 532 --LTINDVGTADAGRYECVA 549 V-set: domain 4 of 4, from 478 to 565: score 26.0, E = 0.00087 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss ++ + p+ tv++G++v LpC+ + + + mKIAA0230 478 PVFASI--PS----------DMTVEVGTNVQLPCSSQ---GEP---- 505 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn + ++W + +++ +g++++s+ mKIAA0230 506 EP-AITWNK-DGV--------------QVTE----------SGKFHISPE 529 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* + LtI+++ +D G Y C+ +++ + +++L V mKIAA0230 530 GF-----LTINDVGTADAGRYECVarntigyaSVSMVLSVN 565 I-set: domain 4 of 4, from 478 to 565: score 96.9, E = 3.9e-25 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F +p+d++V +G + + C +G+PeP ++W KdG ++++ mKIAA0230 478 PVFASIPSDMTVEVGTNVQLPCSSQGEPEPAITWNKDGVQVTE---- 520 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtVq s++f+++ +g +LtI++v +D+G Y CvA+N G a++s L V mKIAA0230 521 SGKFHISPEG-----FLTINDVGTADAGRYECVARNTIGYASVSMVLSVN 565 <-* mKIAA0230 - - An_peroxidase: domain 1 of 1, from 692 to 1245: score 708.1, E = 4.2e-209 *->spYRtlDGtCNNLqnPRtwGaantpfrRllgPPsYdDGidaPR.... ++YRt+DGtCNNLq+P +wGa+ t+f+Rll + Y++G+++PR+ ++ mKIAA0230 692 QKYRTHDGTCNNLQHP-MWGASLTAFERLL-KAVYENGFNTPRgins 736 srSadGspLPsaRviSrklhgdstfldpkpsfthllmqwGQFmaHDitft r +G LP +R++S++l g + ++ +fth+lmqwGQF++HD+ +t mKIAA0230 737 QRQYNGHVLPMPRLVSTTLIGTEVITPDE-QFTHMLMQWGQFLDHDLDST 785 tmpsstsedGdaldCCscgkkvsgsnvhprFCfPIpipadDpyfgpfgRg ++s++++ d + C+ s+ + p Cf++ ip++Dp R mKIAA0230 786 VVALSQARFSDGQHCS------SVCSNDPP-CFSVMIPPNDPRV----RS 824 .vrClrFvRsapapttigsdcelg....pRAeQlNqnTayiDaSvvYGSs + rC+ FvRs p+++ g ++ l ++ pR eQ+Nq+T+yiDaS vYGS+ mKIAA0230 825 gARCMFFVRSSPVCGS-GMTSLLMnsvyPR-EQINQLTSYIDASNVYGST 872 aeearklR..aFqgGlLk..tsptdglPvrrdllPidnnesaecsersas + ear++R+ a + GlL++++ +++g + llP+ +++ec +r mKIAA0230 873 DHEARSIRdlASHRGLLRqgIVQRSG----KPLLPFATGPPTEC-MRDEN 917 rlgkyCFiaGDdRaNlqpgLaaLHiLFvREHNrlAaaLkelNPhWsDErl + +CF+aGD RaN+q+gL+++H+L+ REHNr+Aa+L +lNPhW+ +++ mKIAA0230 918 ESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIAAELLKLNPHWDGDTV 967 FQEARkIviAqmQhItynEyLPilLGksltlmkmfglrplksGygpydgY ++E+RkIv+A++QhIty+ +LP++LG mkm+g y+gY mKIAA0230 968 YHETRKIVGAEIQHITYRHWLPKILGE--VGMKMLGE---------YRGY 1006 dpnVnPsilneFAaAAFRFGHSlipgafprvdengnpintgVpYsltrLs dp+Vn++i n FA+AAFRFGH+li + ++r+den+ pi g ++L+ mKIAA0230 1007 DPSVNAGIFNAFATAAFRFGHTLINPLLYRLDENFEPIPQG----HVPLH 1052 dgvfnpdqlyadglgvrdIdatilarevPLedlidadaEklLadigvdel + +f p+++ ++g g+d+l mKIAA0230 1053 KAFFSPFRIVNEG--------------------------------GIDPL 1070 lrGLatqpaqr...vDrfitpeltnkLFetrgfngdrlfGlDLasiNIQR lrGL + +++ ++++ + +elt++LF+ + lDLa+iNIQR mKIAA0230 1071 LRGLFGVAGKMripSQL-LNTELTERLFSMAHT-----VALDLAAINIQR 1114 GRDhGlpsYNefRefCGLppitsFeDltdviFtdpetlarLgrvYasdpd GRDhG+p+Y ++R C+L+ + +FeDl+++i +p + +L+r+Y+s mKIAA0230 1115 GRDHGIPPYHDYRVYCNLSAAYTFEDLKNEI-KSPVIREKLQRLYGS-TL 1162 DIDLyVGgllEkpvpGglvGpTfaCIIgeQFsRlrrGDRFyYEngnnpgs IDL+ + E+ vpG+ +GpT+ C +QF+Rlr+GDR +YE npg+ mKIAA0230 1163 NIDLFPALMVEDLVPGSRLGPTLMCLLSTQFRRLRDGDRLWYE---NPGV 1209 FTpeQLaeiRKvsLsrliCdNtdevniervqpdaFsvp<-* F+p+QL +++ +sL+r++CdN+d ni+rvq+d+F+v+ mKIAA0230 1210 FSPAQLTQLKQTSLARILCDNSD--NITRVQQDVFRVA 1245 VWC: domain 1 of 1, from 1367 to 1422: score 43.3, E = 5.4e-09 *->Cv.qnGvvYengetWkpdsqPnGvdkCtyiCtCddiedavrlggkvl Cv+ G + + Wk d+ Ct +C+C++ g++ mKIAA0230 1367 CVdDSGESHGGNTKWKKDP-------CT-VCECKN--------GQIT 1397 CdkitCppelLpsldCpnprrvdalvippGECCpewvC<-* C C+p + Cp+p v+++G CCp vC mKIAA0230 1398 CFVEACQP-----AACPQP------VKVEGACCP--VC 1422 PSP94: domain 1 of 1, from 1339 to 1423: score -42.1, E = 0.49 *->MnvlLGsLvilATfVtlcNasCyiipnkilPgdktdeCtDlkGnKHp ++ L i + N+ +l +t eC D G +H mKIAA0230 1339 -EFVLEMQKIITDLRKQINS-----LESRL---STTECVDDSGESHG 1376 LNsrWkTknCeeCtCeeteIsCCtlvsiPvgYDkdnCqkiFnkEdCtYsV N++Wk + C+ C C+ I+C + P C + E mKIAA0230 1377 GNTKWKKDPCTVCECKNGQITCFVEACQPAA-----CPQPVKVE------ 1415 VEkkdPgKTCeVngWii<-* g C+V + mKIAA0230 1416 ------GACCPV---CL 1423 //