hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00455/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0229  ( 1198 res)   mpf00455

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                166.5    2.7e-45   6
PTB      Phosphotyrosine-binding domain, phosphotyros   158.1    9.2e-43   1
SAM      Sterile alpha motif.                           127.9    1.1e-33   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/6     105   134 ..     1    30 []    34.1  1.9e-05
ANK        2/6     138   167 ..     1    30 []    28.0   0.0013
ANK        3/6     174   203 ..     1    30 []    33.3  3.3e-05
ANK        4/6     207   236 ..     1    30 []    23.3    0.034
ANK        5/6     240   269 ..     1    30 []    33.5    3e-05
ANK        6/6     272   301 ..     1    30 []    21.3     0.13
SAM        1/2     718   787 ..     1    67 []    69.2  5.3e-16
SAM        2/2     792   860 ..     1    67 []    58.8  6.8e-13
PTB        1/1     962  1096 ..     1   156 []   158.1  9.2e-43

Alignments of top-scoring domains:
ANK: domain 1 of 6, from 105 to 134: score 34.1, E = 1.9e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpLH+Aa ng+ +vv+ Ll+++a  n+   
   mKIAA0229   105    TGYTPLHHAALNGHRDVVEVLLRNDALTNV    134  

ANK: domain 2 of 6, from 138 to 167: score 28.0, E = 0.0013
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+ pLHlAa +g+  +v+lL++ g++ +    
   mKIAA0229   138    KGCYPLHLAAWKGDAQIVRLLIQQGPSHTR    167  

ANK: domain 3 of 6, from 174 to 203: score 33.3, E = 3.3e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      d+ T+LH+Aa++g+ evvk+Ll++  d+++   
   mKIAA0229   174    DNETALHCAAQYGHTEVVKALLEELTDPTM    203  

ANK: domain 4 of 6, from 207 to 236: score 23.3, E = 0.034
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                         TpL lAa +g+levvklLl + +++     
   mKIAA0229   207    KFETPLDLAALYGRLEVVKLLLGAHPNLLS    236  

ANK: domain 5 of 6, from 240 to 269: score 33.5, E = 3e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                        +TpLHlAa+ng++ vv+ Lld+g d n+   
   mKIAA0229   240    RKHTPLHLAARNGHKAVVQVLLDAGMDSNY    269  

ANK: domain 6 of 6, from 272 to 301: score 21.3, E = 0.13
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +  ++LH Aa  g  +vv++Ll +g d+n+   
   mKIAA0229   272    EMGSALHEAALFGKTDVVQILLAAGIDVNI    301  

SAM: domain 1 of 2, from 718 to 787: score 69.2, E = 5.3e-16
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt..seedLk
                       s+  + sV+eWLesigl+qY++ ++ ng+d   +l  +  +e+dL 
   mKIAA0229   718    GSrTLEQSVGEWLESIGLQQYESKLLLNGFDDVRFLGSNvmEEQDLR 764  

                   elGitllGhRkkIlsaiqklkeq<-*
                   e+Gi++++hR+k+l+a ++l +    
   mKIAA0229   765 EIGISDPQHRRKLLQAARSLPKV    787  

SAM: domain 2 of 2, from 792 to 860: score 58.8, E = 6.8e-13
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt.seedLke
                      +++ sp sV  WL+s+gl++Y+  F++ g+++ + ++ + ++e+ + 
   mKIAA0229   792    YDgVSPTSVPSWLDSLGLQDYVHSFLSSGYSSIDTVKNLwELELVNV 838  

                   lGitllGhRkkIlsaiqklkeq<-*
                   l+++llGhRk+I+ ++ +   +   
   mKIAA0229   839 LKVHLLGHRKRIIASLADRPYE    860  

PTB: domain 1 of 1, from 962 to 1096: score 158.1, E = 9.2e-43
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr...sekk
                      +e + +e+ YLGs+ ++  r       g++  q+a++k+r++++++k
   mKIAA0229   962    FESCGYEANYLGSMLIKDLR-------GTESTQDACAKMRkstEHMK 1001 

                   kpqkvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrwntGgdgs
                   k  ++ils++ +gvk id+ +k+v+aeh +r+Is++a+dp          
   mKIAA0229  1002 KIPTIILSITYKGVKFIDASNKNVIAEHEIRNISCAAQDP---------- 1041 

                   tdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaa.aedialaigqaF
                    +d+++F+yi++d  +s       ++ CHVF + +++ +++i+l++gqaF
   mKIAA0229  1042 -EDLCTFAYITKDLQTS-------HHYCHVFSTVDVNlTYEIILTLGQAF 1083 

                   qvayelklkarse<-*
                   +vay+l+l+a ++   
   mKIAA0229  1084 EVAYQLALQAQKS    1096 

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