hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpf/mpf00455/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0229 ( 1198 res) mpf00455 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Ank Ankyrin repeat 182.4 7.5e-51 7 PID Phosphotyrosine interaction domain (PTB/PID) 180.1 3.6e-50 1 SAM_1 SAM domain (Sterile alpha motif) 134.1 2.5e-36 2 SAM_2 SAM domain (Sterile alpha motif) 88.1 1.8e-22 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Ank 1/7 32 104 .. 1 33 [] 0.3 1.9e+02 Ank 2/7 105 137 .. 1 33 [] 37.4 3.3e-07 Ank 3/7 138 170 .. 1 33 [] 34.7 2.1e-06 Ank 4/7 174 206 .. 1 33 [] 38.8 1.3e-07 Ank 5/7 207 237 .. 1 33 [] 23.1 0.0064 Ank 6/7 240 272 .. 1 33 [] 36.7 5.4e-07 Ank 7/7 273 304 .. 1 33 [] 21.3 0.022 SAM_1 1/2 719 785 .. 1 66 [] 62.0 1.3e-14 SAM_2 1/2 719 787 .. 1 72 [] 51.1 2.4e-11 SAM_1 2/2 793 858 .. 1 66 [] 72.2 1.1e-17 SAM_2 2/2 792 860 .. 1 72 [] 37.0 4.3e-07 PID 1/1 967 1093 .. 1 166 [] 180.1 3.6e-50 Alignments of top-scoring domains: Ank: domain 1 of 7, from 32 to 104: score 0.3, E = 1.9e+02 *->dGfTPLHlAalrg.................................. + L Aa+ g+ + ++ +++ +++ ++++++++++++++++ mKIAA0229 32 GKEQELLEAARTGhlpavekllsgkrlssgfggggggsgsgggsggg 78 ....nlevvklLls..qGAdlnaqdd<-* + +++ ++ Lls +G ++n +d mKIAA0229 79 glgsSSHPLSSLLSmwRGPNVNCVDS 104 Ank: domain 2 of 7, from 105 to 137: score 37.4, E = 3.3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPLH+Aal+g+ +vv+ Ll + A n+ d mKIAA0229 105 TGYTPLHHAALNGHRDVVEVLLRNDALTNVADS 137 Ank: domain 3 of 7, from 138 to 170: score 34.7, E = 2.1e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PLHlAa +g++++v+lL++qG + ++ mKIAA0229 138 KGCYPLHLAAWKGDAQIVRLLIQQGPSHTRVNE 170 Ank: domain 4 of 7, from 174 to 206: score 38.8, E = 1.3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +T+LH+Aa++g++evvk Ll+ d+ ++++ mKIAA0229 174 DNETALHCAAQYGHTEVVKALLEELTDPTMRNN 206 Ank: domain 5 of 7, from 207 to 237: score 23.1, E = 0.0064 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPL lAal+g+levvklLl+ A +n+ mKIAA0229 207 KFETPLDLAALYGRLEVVKLLLG--AHPNLLSC 237 Ank: domain 6 of 7, from 240 to 272: score 36.7, E = 5.4e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPLHlAa++g++ vv+ Ll++G d n q+ mKIAA0229 240 RKHTPLHLAARNGHKAVVQVLLDAGMDSNYQTE 272 Ank: domain 7 of 7, from 273 to 304: score 21.3, E = 0.022 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G ++LH Aal g ++vv+ Ll +G d+n++d+ mKIAA0229 273 MG-SALHEAALFGKTDVVQILLAAGIDVNIKDN 304 SAM_1: domain 1 of 2, from 719 to 785: score 62.0, E = 1.3e-14 *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeD..Le + + +sVgeWLesigl +qY++ l +g++d++ l +e+++L+ mKIAA0229 719 SRTLEQSVGEWLESIGL-QQYESKLLLNGFDDVRFLGSNVMEEqdLR 764 dlGvtllGHrkkIlssIqgLk<-* ++G+ + Hr k+l++ + L mKIAA0229 765 EIGISDPQHRRKLLQAARSLP 785 SAM_2: domain 1 of 2, from 719 to 787: score 51.1, E = 2.4e-11 *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL + sv+eWLesigl +qY+ +++ +g++ + l + ++e+dL mKIAA0229 719 SRTLEQ-SVGEWLESIGL-QQYESKLLLNGFDDVRFLGsNVMEEQDL 763 aklalGitsvghRkkilskiqelkqq<-* ++Gi++++hR+k+l+++ +l mKIAA0229 764 -R-EIGISDPQHRRKLLQAARSLPKV 787 SAM_1: domain 2 of 2, from 793 to 858: score 72.2, E = 1.1e-17 *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeDLed. dg s+ sV+ WL+s+gl + Y+++Fl+ gy+++dt+++l+e +L++ mKIAA0229 793 DGVSPTSVPSWLDSLGL-QDYVHSFLSSGYSSIDTVKNLWELELVNv 838 lGvtllGHrkkIlssIqgLk<-* l+v llGHrk+I s+ + mKIAA0229 839 LKVHLLGHRKRIIASLADRP 858 SAM_2: domain 2 of 2, from 792 to 860: score 37.0, E = 4.3e-07 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa ++ s+ sv +WL+s+gl ++Y+ +F++ g+++++ + ++l e +L mKIAA0229 792 YDGVSPTSVPSWLDSLGL-QDYVHSFLSSGYSSIDTV-KNLWELEL- 835 klalGitsvghRkkilskiqelkqq<-* + l+++++ghRk+i+ ++ + + mKIAA0229 836 VNVLKVHLLGHRKRIIASLADRPYE 860 PID: domain 1 of 1, from 967 to 1093: score 180.1, E = 3.6e-50 *->FeVkYLGsvEVpeemrapskstRmqvareairrlkmavpgKkpkakk +e++YLGs+ +++ ++ ++ +++a ++km+ mKIAA0229 967 YEANYLGSMLIKDLRG-------TESTQDA--CAKMR---------- 994 ikrskgstgerqagtkidLsistdglklldekteaekevlhehplrkISF +st+++++ i+Lsi+++g+k++d+ + k+v++eh++r+IS+ mKIAA0229 995 -----KSTEHMKKIPTIILSITYKGVKFIDASN---KNVIAEHEIRNISC 1036 iAvggDpdVdlrtFayvrstddsliaadgatsrfaCHvFecekgkqlAed +A+ Dp+ dl+tFay i++d +ts+++CHvF +++ ++l+++ mKIAA0229 1037 AAQ--DPE-DLCTFAY--------ITKDLQTSHHYCHVFSTVD-VNLTYE 1074 iaqavgqAFevaYqeflra<-* i++++gqAFevaYq+ l+a mKIAA0229 1075 IILTLGQAFEVAYQLALQA 1093 //